KEGG T00020: jhp1169

Helicobacter pylori J99: jhp1169

Entry

jhp1169 CDS T00020

Gene name

vacB

Definition

ribonuclease II family protein

Orthology

K12573

ribonuclease R [EC:3.1.-.-]

Organism

hpj Helicobacter pylori J99

Pathway

hpj03018

RNA degradation

Class

Genetic Information Processing; Folding, sorting and degradation; RNA degradation [PATH:hpj03018]

SSDB

Motif

Pfam:

RNB Alpha-amylase_N

Other DBs

NCBI-GI:

15612234

NCBI-GeneID:

889803

UniProt:

Q9ZJX9

Position

complement(1301712..1303646)

AA seq 644 aa
MQGFLRSLFFGVKKIPKRFAPLVEKGVLKEALQSNKDRYLLKEGFDIGKIERVKNKAFFI
SLAKNYPKDPLIKNLPPSFKTDALILCQIECSKKRPIAFFKAALLNADHAMIAYLAKEKN
QIVAIPFKEPFKKPISLKHSQRSLLELPRHCVVKIDLKKREISEILGALEDPLIDENLSL
SLFDRIKDFSKDCLDLAQYYAQLKASDFKDRINYSHIPFITIDPKDAKDFDDAIFYDKEK
NTLFVAVADVSEFVPKHSSLDKEARIRGFSVYFPNSVYPMLPLSLSQGACSLKAFEKRLA
LVYEIPLDNLKNARLSQGVIEVRANCAYEEINHFLNTQQSSLGKDLQQSLLGFLEVALKL
KKERLKKGFNFNSFENKLYLNEEGRIEKIETEKESGAHTLIEEAMLLANQSSARLLDGHF
HNRGIYRTHKEPSLEQQKRLYDKLFDYEIVRPKNMGFFPFLEHALKISQEKSIEREVSRL
IIKSQNLALYSPMQESHFGLGFASYTHFTSPIRRYSDLALHRLLKELLFHQAKGCSYLLE
ETPELCAELNALQKKAALIERDFIKRKFARLALEFLEKEFLGVVLEAKDWVVVGLKEFIG
LKVLIKTNKVFKPLEKVRIKITHADLILGQVRGEITERIKEHVS

NT seq 1935 nt +upstreamnt +downstreamnt
atgcaagggtttttaagaagccttttttttggggttaaaaagatccctaaacgattcgct
cccctagtagaaaagggcgttttaaaagaagcgcttcaatcaaacaaggatcgctatctt
ttaaaagaaggctttgatataggcaagattgaaagggtaaaaaataaggcgtttttcatt
tctttagcgaaaaattaccctaaagaccctttaatcaaaaacttacccccctcttttaaa
acagacgctttgattttatgccaaatagaatgttctaaaaagcgccccatagcctttttt
aaagccgctcttttaaatgcggatcatgcgatgatagcctacttggctaaagaaaaaaac
cagattgtggctatcccttttaaagagccttttaaaaaacctatttctttaaagcacagc
caaagatccttattggaattgcccaggcattgcgtggtaaagatcgatcttaaaaagcgt
gaaatcagcgaaattttgggggctttagaagaccctttaatagatgaaaacctttcttta
agcctttttgacaggattaaggatttttcaaaagattgcttggatttagcgcaatattac
gcgcaactcaaagcgagcgattttaaagacaggatcaattactcccacatcccttttatc
accattgaccctaaagacgctaaagattttgacgatgcgattttttacgataaagaaaaa
aataccttgtttgtggcggttgctgacgtgagcgaatttgtgccgaaacattccagtttg
gataaagaagctaggattaggggctttagcgtgtatttccctaatagcgtctatcccatg
ctgcctttgagtttgtctcaaggggcatgctcattaaaagcgtttgaaaaacgcctggct
ttagtgtatgaaatccctttagataatttgaaaaacgcccgattatctcaaggcgttatt
gaagttagggctaattgcgcttatgaagaaatcaatcattttttaaatacccaacaaagc
tctttaggtaaagatttgcaacaaagccttttggggtttttagaggtggctttaaaatta
aaaaaggagcgtttaaaaaaagggtttaatttcaattcctttgaaaacaagctgtatttg
aatgaagaagggcgtatagaaaaaattgaaacagaaaaagaaagcggtgcgcacaccctc
atagaagaagccatgctcttagccaaccagtctagtgctaggttattagatgggcatttt
cacaatagggggatataccgcacccacaaagagccgagtttggagcagcaaaaacgcctc
tacgacaagctttttgattatgagattgtgcgccctaaaaacatgggtttttttcctttt
ttagagcatgccttaaagatatcccaagaaaagagtatagaaagagaagtttcacgctta
atcatcaagtctcaaaatttagccctttatagccccatgcaagaaagccattttggtttg
gggtttgctagctatacgcatttcacttcgcccattagacgatacagcgatctagcctta
cacaggcttttaaaagaattattgttccatcaggctaaaggttgctcgtatttgttagaa
gaaacgcctgaattatgcgctgaattgaacgctttacaaaaaaaggccgctttgattgaa
agggatttcatcaagcgcaaattcgcccgcttggctttagaatttttagaaaaagagttt
ttgggcgtggttttagaggctaaagattgggtggtggtggggttaaaagaatttataggg
cttaaagttttgatcaaaacgaacaaggtttttaagccgttagaaaaggtgcgtattaaa
atcacgcatgcggatttgattttagggcaagttagaggcgaaatcacagaaaggattaaa
gagcatgtatcgtaa

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (10)   

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