KEGG   Helicobacter pylori B8: HPB8_813
Entry
HPB8_813          CDS       T01262                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
hpl  Helicobacter pylori B8
Pathway
hpl03030  DNA replication
hpl03410  Base excision repair
hpl03420  Nucleotide excision repair
hpl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hpl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HPB8_813 (ligA)
   03410 Base excision repair
    HPB8_813 (ligA)
   03420 Nucleotide excision repair
    HPB8_813 (ligA)
   03430 Mismatch repair
    HPB8_813 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hpl03032]
    HPB8_813 (ligA)
   03400 DNA repair and recombination proteins [BR:hpl03400]
    HPB8_813 (ligA)
Enzymes [BR:hpl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     HPB8_813 (ligA)
DNA replication proteins [BR:hpl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     HPB8_813 (ligA)
DNA repair and recombination proteins [BR:hpl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     HPB8_813 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HPB8_813 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     HPB8_813 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      HPB8_813 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 PTCB-BRCT HHH_5 BRCT_2 DNA_ligase_ZBD
Other DBs
NCBI-ProteinID: CBI66370
UniProt: D7FDW3
Position
complement(792649..794619)
AA seq 656 aa
MIKSQKEYLERIAYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQANSPTQ
KVGAITTNSFNKNSHLMRMWSLDDVFNQSELQAWLQRILKAYPSASFVCSPKLDGVSLNL
LYQHGKLVKATTRGNGLEGELVTNNAKHIANIPHFIAYDGEIEIRGEVIISKKDFDALNQ
ERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFLSFKECLDFIVS
LGFSAIQYLSLNKNHQEIEDNYHTLIREREGFFALLDGMVIVVDELDIQKELGYTQKSPK
FACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMINRATLHNYSEIEKKN
IMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCEEIFTYCQNLN
CPARLKESLIHFASKDALNIQGLGDKVIEQLFEEKLIVNALDLYALKLEDLMRLDKFKIK
KAQNLLDAIQKSKNPPLWRLINALGIEHIGKGASKTLARYGLNVLEKSEAEFLEMEGFGV
EMARSLVNFYASNQEFIRSLFELLNPRNSDMAEEKQKSSSVFNNKTIVLTGTLSKPRQEY
AQMLENLGAKISSSVSAKTDFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKELD
NT seq 1971 nt   +upstreamnt  +downstreamnt
atgataaaaagccaaaaagaatatttagaaagaattgcatatttaaacaccctatcgcac
cattattacaaccttgatgatccaatcgtgagcgacgcggtctatgatgaactttatcaa
gaattaaaagcttatgaagaaaaaaaccctaatagcattcaagctaactcccctacccaa
aaagtgggggctattaccaccaattcgttcaataaaaactctcatttaatgcggatgtgg
agcttagatgatgtgttcaatcaaagcgaattgcaagcgtggttgcaacgcattttaaaa
gcctatcctagcgcttcgttcgtgtgttcgcccaaacttgatggggtttcgctcaatctt
ttgtatcaacatggcaagttagtgaaggcgaccactaggggtaatggcttagaaggagag
cttgttactaacaacgctaaacacatcgctaatatcccccattttatcgcttatgatgga
gaaatagaaatcaggggcgaagtgatcatttctaaaaaggattttgacgctttgaatcaa
gagcgcttaaacgctaatgaacccctattcgctaaccctagaaatgccgcatcagggagt
ttgaggcaacttgatagcgaaatcactaaaaagcgtaaattacaattcattccttggggc
gtgggcaagcattctttaaattttttaagctttaaggagtgtttggattttattgtctcg
ttaggttttagcgccattcaatatttaagcctaaacaaaaaccaccaagaaatagaagac
aattaccacaccctgattagagaaagggagggcttttttgcccttttagacggcatggtg
atcgttgtggatgaattggatattcaaaaggagctaggttacacgcaaaaatcccccaaa
ttcgcttgcgcttataaattcccggctctagaaaaacacaccaaaatcataggagtcatt
aaccaagtggggcgcagcggggcaatcacaccggtcgctctcttagagcctatagaaatc
gctggggctatgattaatagagcgaccttgcacaattattctgaaattgaaaaaaagaat
atcatgctcaatgatagagtcgttgtcattagaagcggcgatgtgatccctaaaatcatc
aaacctttagaatcttatagagacggctcgcaacacaaaattgaacgccccaaagtttgc
cctatatgttcgcatgagcttttgtgcgaagagatttttacttattgtcaaaaccttaat
tgcccggcaaggttgaaagaaagcttgattcatttcgcttctaaggacgctttaaacatt
caaggcttgggcgataaagtcatagagcaactttttgaagaaaaactcattgttaacgcc
ctggatttgtatgctttaaaattggaagatttaatgcggctagacaaattcaaaatcaaa
aaagctcaaaatctattagacgctattcaaaagagcaaaaaccctcctttatggcgtttg
atcaacgctttagggattgagcatatcggtaagggagcgagtaaaacgctagccagatac
ggcttaaatgtgttagaaaaaagcgaagccgagtttttagaaatggaaggctttggggtg
gaaatggcgcgctctttagtcaatttttatgcgagcaatcaggaatttatccgatcgtta
tttgagttattaaaccctagaaatagcgatatggctgaagaaaagcaaaaaagctcttct
gttttcaataataaaacgattgttttaaccggcacgctttctaaaccacggcaagaatac
gctcaaatgttagaaaatttaggggcaaaaatttcttcaagcgtgagcgctaaaaccgat
tttttaatcgctggagaaaatcccggctcaaaactcgctctagcaaaaaaacatggcgtg
agcgttttgaatgaagaagaattattaaagcgccttaaagaattggattga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (28)   

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