KEGG   Helicobacter pylori SJM180: HPSJM_06240
Entry
HPSJM_06240       CDS       T01323                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
hpm  Helicobacter pylori SJM180
Pathway
hpm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hpm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HPSJM_06240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hpm03019]
    HPSJM_06240
   03016 Transfer RNA biogenesis [BR:hpm03016]
    HPSJM_06240
Enzymes [BR:hpm01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     HPSJM_06240
Messenger RNA biogenesis [BR:hpm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     HPSJM_06240
Transfer RNA biogenesis [BR:hpm03016]
 Prokaryotic type
  tRNA degradation factors
   HPSJM_06240
SSDB
Motif
Pfam: RNB
Other DBs
NCBI-ProteinID: ADO02812
UniProt: E1Q104
Position
complement(1266398..1268332)
AA seq 644 aa
MQGFLRSLFFGVKKIPKRFAPLVEKGVLKEALQSNKDRYFLKEGFDIGRIERVKNKAFFI
SLAKNYPKDPLIKNLPPFFKTDALILCQIECSKKRPIAFFKAALLNADHTMIAYLAKEKN
QIVAIPFREPFKKPVSLKHSQKSLLELPRHCVVKIDLKKREISGILGALEDPLIDENLSL
SLFDRVKDFSKDCLDLAQHYAQLKASDFKDRINYSHIPFITIDPKDAKDFDDAIFYDQEK
RVLFVAVADVSEFVPKHSSLDKEARVRGFSVYFPNSVYPMLPLSLSQGACSLKAFEKRLA
LVYEIPLDDLKNARLSQGVIEVRANCTYEEINHFLSANQSFLDKDLQQSLLGFLEMALKL
KKERLKKGFNFNSFENKLYLNKEGRIEKIETEKESSAHTLIEEAMLLANQSSARLLDEHF
HNKGIYRTHKEPSLEQQKRLYAKLFDYEIVRPKNMGFFPFLEHALKIAKEKSIEREVSRL
IIKSQNLALYSPMQESHFGLGFASYTHFTSPIRRYSDLALHRLLKELLFHQAKGCSYLLE
ETPELCAELNALQKKAALIERDFIKRKFARLALEFLEKEFLGVVLEVKDWVVVGLKEFIG
FKVLIKTNKVFKPLEKVRVTITHADLILGQVRGEITERIKEHVS
NT seq 1935 nt   +upstreamnt  +downstreamnt
atgcaagggtttttaagaagcctgttttttggggttaaaaagatccctaagcgattcgcc
cccctagtagaaaagggcgttttaaaagaagcgcttcaatcaaacaaggatcgctatttt
ttaaaagaaggctttgatataggtaggattgaaagggtaaaaaataaggcgtttttcatt
tctttagcaaaaaattaccctaaagaccctttaatcaaaaacttacccccattttttaaa
acagacgctttgattttatgccaaatagaatgttctaaaaaacgccccatagcctttttt
aaagccgctcttttaaatgcagatcacacgatgatagcttacttggctaaagaaaaaaac
cagattgtggctatcccttttagagagccttttaaaaaacctgtttctttaaagcacagc
caaaaatccttattagaattgcccaggcattgcgtggtaaagatcgatcttaaaaagcgt
gaaatcagcggaattttaggggctttagaagaccctttaatagatgaaaacctttcttta
agcctttttgacagggttaaggatttttcaaaagattgtttggatttagcccaacattac
gcgcaactcaaagcgagcgattttaaagacagaatcaattattctcatatcccttttatc
accattgaccccaaagacgctaaagactttgacgatgcgattttttatgaccaagaaaaa
agggttttgtttgtggcggttgctgatgtgagcgaatttgtgccgaaacattccagtttg
gataaagaagctagggttaggggctttagcgtgtatttccctaacagcgtctatcccatg
ctgcctttgagtttgtctcaaggggcatgctcattaaaagcgtttgaaaaacgcctggct
ttagtgtatgaaatccctttagatgatttgaaaaacgcccgattatctcaaggcgtcatt
gaagttagggctaattgcacttatgaagaaatcaatcattttttaagcgctaatcaaagc
tttttagataaagatttgcaacaaagccttttggggtttttagagatggctttaaagtta
aaaaaggagcgtttaaaaaaggggtttaatttcaattcgtttgaaaacaagctgtatttg
aataaagaagggcgtatagaaaaaattgaaacagaaaaagaaagcagcgcacacactctt
atagaagaagccatgctcttagccaaccagtctagtgctaggttattagatgagcatttt
cacaataaggggatataccgcacccataaagagccgagtttggagcagcaaaaacgcctt
tacgctaagctttttgattatgagattgtgcgtcctaaaaacatgggcttttttcctttt
ttagagcatgctttaaagatagccaaagaaaagagtatagaaagagaagtttcacgcttg
attattaagtctcaaaatttagccctttatagccccatgcaagaaagccattttggtttg
gggtttgccagctatacgcatttcacttcgcccattagacgatacagcgatctagcctta
cacaggcttttaaaagaattgttgttccatcaagctaaaggctgctcgtatttgttagaa
gaaacgcctgaattatgcgctgagttgaacgctttacaaaaaaaggccgctttgattgaa
agggattttatcaagcgcaaattcgcccgcttagctttagagtttttagaaaaggagttt
ttgggcgtggttttagaggttaaagattgggtggtggtggggttaaaagaatttataggg
tttaaagttttgatcaaaacgaacaaggtttttaagcctttagaaaaggtgcgcgttaca
atcacgcatgcggatttgattttagggcaagttagaggcgaaatcacagaaaggattaaa
gagcatgtatcgtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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