KEGG T03182: HPOKI102

Helicobacter pylori oki102: HPOKI102_05320

Entry

HPOKI102_05320    CDS       T03182

Name

(GenBank) DNA topoisomerase I

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

hpyb Helicobacter pylori oki102

Brite

KEGG Orthology (KO) [BR:hpyb00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hpyb03032]
    HPOKI102_05320
   03400 DNA repair and recombination proteins [BR:hpyb03400]
    HPOKI102_05320
Enzymes [BR:hpyb01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     HPOKI102_05320
DNA replication proteins [BR:hpyb03032]
Prokaryotic type
  DNA Topoisomerases
   HPOKI102_05320
DNA repair and recombination proteins [BR:hpyb03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      HPOKI102_05320

SSDB

Motif

Pfam:

Topoisom_bac Toprim ESCRT-II

Other DBs

NCBI-ProteinID:

AHN34982

Position

complement(1085767..1087800)

AA seq 677 aa
MKDSVIIIESPNKVEKIKQLTGAEVYATIGHFTNLIGVDIENNFACKFEIKEDKAKKINF
LINACRDKKVYIATDPDREGYGIGYQFYEKIKNVASEIYRAEFHEITPSGIENGLKNAVL
FSRSNTNLYQSFLGRIASDQVVGFALTSYLRKSLNLSELSAGRVQTPALALICQRDQEIR
DFDKLDAEEKVEYQIQASIVCNEKEVIIKHVRANEKNELVDFKFKDKNEASQFLQDLKDG
LGSMSVLALLKESLSIKEPKKPFTTSKLLSQASKSLKIPTKEIAQLAQKLFEAGLITYHR
TDSEFLSPEYLKEHEVFFEPIYPSIYQYREYKAGKNSQAEAHEAIRITHPHALKDLEKVC
SDAKISEELALKLYQLIYANTICSQSRNALYNQYDCIFKIKSESFKLSFKLLKEKGFLEI
EELIQGKEELSKEEQENEIENFSLKENDSVPLKEVFIKEIEKPSPKPYKESAFIPLLESE
GIGRPSTYASFLDLLLKRKCISIDTKTNTITPTSQGLEVISFFKKDKEVDFIALTSKDKS
KLGSTTKQFEECLDLIMRGEASYEKFMLEVISKLKSTAKFYQTQSTNNNMPTDKQLELIE
KICKDKKLQKPSQEILQNKEKCSDWIAEHVKEKPSQKQLDLVKKICEGCKLAMPINKVLN
DKFAISKWIDEHKKTKK

NT seq 2034 nt +upstreamnt +downstreamnt
atgaaagatagcgtgattatcattgaaagccctaataaggttgaaaagattaaacaacta
acaggtgcggaagtttatgcaactatagggcattttactaaccttataggcgtagatatt
gaaaataattttgcttgtaagtttgaaatcaaagaagacaaggctaagaaaataaatttt
ttaatcaatgcttgtagggacaaaaaagtctatatcgctactgaccctgatagagagggc
tatggtattggttatcaattttatgaaaaaattaaaaatgtagctagtgaaatttatcgt
gcagaatttcatgagatcacaccaagcggtattgaaaacggcttaaaaaatgcggtgtta
ttttctcgttctaacactaatttataccaatcattcttaggcagaattgcaagcgatcag
gttgttggatttgctctaacaagctatttaagaaaaagtttaaatcttagtgaattgagc
gctggtagagtgcaaactccagctctagctttaatctgccaaagagatcaagaaataagg
gattttgataagttggatgctgaagaaaaagtagaatatcaaatccaagctagtattgtg
tgcaatgaaaaagaagtgattattaagcatgtaagggcgaatgaaaaaaacgaactagtg
gattttaaatttaaagacaaaaacgaagcatctcaatttttacaagatctaaaggacgga
ttaggatctatgagtgttctagctttattaaaagaaagtctatccattaaagaacccaaa
aaacctttcaccacctctaaacttttatcccaagcgagcaaatccttaaaaatacccact
aaagaaatcgcacaacttgctcaaaaactctttgaagctggtctcatcacttatcacaga
actgatagtgaatttttaagtcctgagtatctcaaagaacatgaagtgttttttgaacct
atttatccgagtatttatcaatacagggaatataaagctggcaaaaactcacaagctgaa
gcgcatgaagccataagaattacacatccgcatgctttaaaagacttagaaaaagtgtgc
agtgacgctaaaataagcgaagaattagcgctgaagttgtatcaacttatttatgccaat
acaatttgttctcaaagtagaaacgccttatacaatcaatatgattgtatctttaaaatc
aaaagcgagagttttaagctctctttcaaacttttaaaagaaaagggttttttagagatt
gaagaactcattcaaggcaaagaagaacttagcaaggaagaacaagaaaatgaaatagaa
aacttttcattaaaagaaaatgacagtgtcccattaaaagaagtttttattaaagaaata
gaaaaacccagtcctaaaccttataaagaaagtgcctttattcccttattagaaagcgag
gggattggtcgtcctagcacttatgcgagcttcttagatcttcttttgaagcgtaaatgt
attagcattgatacaaaaactaacactatcacccctactagtcaaggattagaagtgatt
tcatttttcaaaaaagataaagaagtggatttcatcgctcttacaagcaaggataagagc
aaattaggaagcactaccaaacaatttgaagaatgtttggatttaatcatgagaggtgaa
gctagttatgaaaagttcatgcttgaagtcataagcaagttaaaaagcaccgccaagttt
tatcaaacacaatctactaacaataacatgcctactgataagcaacttgaactcatagaa
aaaatttgtaaagataaaaaattacaaaaacccagtcaagaaatcttgcagaacaaggaa
aaatgttctgattggattgcagagcatgttaaagaaaaacccagtcaaaaacaactggat
ctggttaaaaaaatttgtgaagggtgcaaattggcaatgcccatcaataaagtattgaat
gacaaattcgctatctctaaatggattgatgaacacaaaaagacaaagaaatga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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