KEGG   Helicobacter pylori oki112: HPOKI112_02005
Entry
HPOKI112_02005    CDS       T03723                                 
Name
(GenBank) single-stranded DNA exonuclease
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hpyc  Helicobacter pylori oki112
Pathway
hpyc03410  Base excision repair
hpyc03430  Mismatch repair
hpyc03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hpyc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    HPOKI112_02005
   03430 Mismatch repair
    HPOKI112_02005
   03440 Homologous recombination
    HPOKI112_02005
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hpyc03400]
    HPOKI112_02005
DNA repair and recombination proteins [BR:hpyc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     HPOKI112_02005
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     HPOKI112_02005
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      HPOKI112_02005
SSDB
Motif
Pfam: DHH DHHA1 RecJ_OB Fe-S_biosyn GLUCM-like_C
Other DBs
NCBI-ProteinID: AHN35866
UniProt: X2I292
Position
complement(391468..393018)
AA seq 516 aa
MKQKLKAQIKERVASITYKEKGFPSPFLFKDLKKAALKIIEAMRTNTEILVVGDYDADGV
ISSTIMAKFFESLNYKHVRIIIPNRFIDGYGISKKFLEKHHAPLIITVDNGISAFEAARF
CKEKNYTLIITDHHCLHHDEVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLG
KEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRS
LKASDISFSIAPLINSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQVF
EEAFKHAMVGEKIIVAFKEDWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSARSSPN
IDLIDALNGVSSLLLGYGGHRQACGLSVEKNNIVSLFETLENFDFKVLPFCEKEPPLTLK
LKDIDRELLEIIEMGEPYGQENPEPLFQAQNLEIVEEKIIKESHQVLRFKDKECVKEAIY
FNADRFLKAGEKVSVLFSVELDECSNEPKMFVKSLL
NT seq 1551 nt   +upstreamnt  +downstreamnt
atgaaacaaaagcttaaagctcaaatcaaagagcgagtggcttctatcacttataaggaa
aaagggtttcctagcccctttttatttaaagacttgaaaaaagccgcactcaaaatcata
gaagccatgcgtacaaacacagaaattttagtggtgggcgattatgacgctgacggcgtg
attagctctactatcatggcaaaattctttgaaagcctgaattataagcatgttcgcatt
ataatccctaatcgcttcattgatggctatgggatttctaaaaaatttttagaaaaacac
cacgcccctttaatcatcacggtggataatgggattagcgcctttgaagccgcgcgattt
tgcaaagaaaaaaattacacccttatcatcacagatcaccattgcttacaccatgatgaa
gtcccagacgcttatgcggtgatcaaccccaagcaaccggattgtgattttatccaaaag
gaagtgtgcggggcgttggtggcgttttatttgtgctatggcatccaccaacttctagga
aaagaaaaaagccattctagcgagttgctatgcttggcgggcgtggcgactattgctgac
atgatgcctttgactttttttaaccgctttttagtttctaaagccttgtattttttgcaa
aaagaatctttaggggcgatggggtttttgcgccaaagagaagtttttagaaaacgctct
ttaaaagcgagcgatatttctttcagtatcgcccccttaatcaactccgcagggcgcatg
caagatgcgaaaatggctttagattttttaagcgcgaataattttcaagatggctatttt
ttgtatgaacgcttgaaagcatgcaatatgaagcgtaaaatgatccaacagcaggttttt
gaagaggcttttaagcatgcgatggttggagaaaaaattatcgtcgcttttaaggaggat
tggcatgagggcgtgttagggattgtggcttcaaaattagtggaagccactcaaaagcca
agcctggtttttacctttaaagaaggggtgtataaagggagcgctcgtagctctccaaat
attgacttgattgacgctttgaatggggtttcttctttattgctcggctatggagggcat
aggcaagcttgcggattgagcgttgaaaaaaacaatatcgtctcgctctttgaaacttta
gaaaattttgattttaaagtcttacctttttgtgaaaaagaaccccctttaacgctcaaa
ttaaaagacattgacagagagcttttagagattatagagatgggcgaaccttatgggcaa
gaaaaccctgagcctttattccaggcacaaaatttagaaatcgtagaagaaaaaatcatt
aaagaaagccaccaggttttgcgttttaaggataaagaatgcgtcaaagaggcgatttat
tttaacgctgatcggtttttgaaagcgggcgaaaaggtgagcgtgctttttagcgtggaa
ttagatgagtgttctaatgagcctaaaatgtttgttaaaagtttgttgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

Download RDF
DBGET integrated database retrieval system