KEGG   Helicobacter pylori oki898: HPOKI898_02020
Entry
HPOKI898_02020    CDS       T03729                                 
Name
(GenBank) single-stranded DNA exonuclease
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hpyj  Helicobacter pylori oki898
Pathway
hpyj03410  Base excision repair
hpyj03430  Mismatch repair
hpyj03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hpyj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    HPOKI898_02020
   03430 Mismatch repair
    HPOKI898_02020
   03440 Homologous recombination
    HPOKI898_02020
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hpyj03400]
    HPOKI898_02020
DNA repair and recombination proteins [BR:hpyj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     HPOKI898_02020
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     HPOKI898_02020
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      HPOKI898_02020
SSDB
Motif
Pfam: DHH DHHA1 RecJ_OB GLUCM-like_C Fe-S_biosyn
Other DBs
NCBI-ProteinID: AHN44535
Position
complement(393353..394903)
AA seq 516 aa
MKQKLKAQIKERVASIAYNEKGFPNPFLFKDLKKAALKIIEAMHANTEILVVGDYDADGV
ISSAIMAKFFESLNYKHVRIAIPNRFMDSYGISKKFLEKHHAPLIITVDNGINAFEAARF
CKEKNYTLIITDHHCLNNDEVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLG
KEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRS
LKASDISFNIAPLINSAGRMQDAKIALDFLSASNFQDGYSLYERLKACNLKRKMIQQQVF
EEAFKHAMVGEKIIIAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSARSSPN
IDLIDALNGVSSLLLGYGGHRQACGLSVEKNNIVSLFETLENFDFKVLPFCEKEPPLTLK
LKDIDRELLEIIEMGEPYGQENPEPLFQAQNLEIVEEKIIKESHQVLRFKDKECVKEAIY
FNADRFLKAGEKVSVLFSVELDECSNEPKMFVKSLL
NT seq 1551 nt   +upstreamnt  +downstreamnt
atgaaacaaaagcttaaagctcaaatcaaagagcgagtggcctctatcgcctataatgaa
aaagggtttcctaacccctttttatttaaagacttgaaaaaagccgcgctcaaaatcata
gaagccatgcacgcaaacacagaaattttagtggtgggcgattatgacgctgacggcgtg
attagctctgctatcatggcaaaattttttgaaagcctgaactataagcatgtccgcatt
gcaatccctaatcgtttcatggatagctatgggatttctaaaaaatttttagaaaaacac
cacgcccctttaatcatcacggtggataacgggattaacgcctttgaagccgcgcgattt
tgtaaagaaaaaaactacacccttatcattacggatcaccattgcttaaataatgatgaa
gtcccagacgcttatgcggtaatcaaccccaagcaaccggattgtgattttatccaaaag
gaagtgtgtggggcgttagtggcgttttatttgtgctatggaatccaccaacttttaggc
aaagaaaaaagccattctagtgagttgctatgcttagcgggcgtggcgactatcgctgat
atgatgcctttgactttttttaaccgctttttagtttctaaagccttgtattttttgcaa
aaagaatccttaggggcgatggggtttttgcgccaaagagaagtttttagaaaacgctct
ttaaaagcgagtgatatttcttttaatatcgcccctttaatcaattccgcagggcgcatg
caagatgcgaaaatagctttagattttttaagcgcgagtaattttcaagatggttattct
ttgtatgaacgcttgaaagcatgcaatttgaagcgtaaaatgatccaacagcaggttttt
gaagaagcttttaagcatgcgatggttggagaaaaaatcatcatcgcttttaaggacaat
tggcatgagggcgtgctggggattgtggcttcaaaattagtggaagccactcaaaagcca
agcttggtttttacctttaaagaaggggtgtataaagggagcgctcgtagctctccaaat
attgacttgattgacgctttgaatggggtttcttctttattgctcggctatggagggcat
aggcaagcttgcggattgagcgttgaaaaaaacaatatcgtctcgctctttgaaacttta
gaaaattttgattttaaagtcttacctttttgtgaaaaagaaccccctttaacgctcaaa
ttaaaagacattgacagagagcttttagagattatagagatgggcgaaccttatgggcaa
gaaaaccctgagcctttattccaggcacaaaatttagaaatcgtagaagaaaaaatcatt
aaagaaagccaccaggttttgcgttttaaggataaagaatgcgtcaaagaggcgatttat
tttaacgctgatcggtttttgaaagcgggcgaaaaggtgagcgtgctttttagcgtggaa
ttagatgagtgttctaatgagcctaaaatgtttgttaaaagtttgttgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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