KEGG   Helicobacter pylori oki898: HPOKI898_05610
Entry
HPOKI898_05610    CDS       T03729                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K04066  primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
Organism
hpyj  Helicobacter pylori oki898
Pathway
hpyj03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hpyj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    HPOKI898_05610
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hpyj03400]
    HPOKI898_05610
Enzymes [BR:hpyj01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     HPOKI898_05610
DNA repair and recombination proteins [BR:hpyj03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     HPOKI898_05610
SSDB
Motif
Pfam: DEAD ResIII Helicase_C PriA_C PriA_CRR AAA_19 AAA_22 PriA_3primeBD ADDB_N nSTAND3 PhoH AAA_7 AAA_30 DUF4508 RecA GpA_ATPase Glycos_transf_2 SLFN-g3_helicase zinc-ribbons_6 zf-CHY
Other DBs
NCBI-ProteinID: AHN45173
Position
complement(1143675..1145534)
AA seq 619 aa
MFYHLIAPLKNKTPPLTYFSKERHLKGALVNISLRNKTLLGVVLEEVSKPSFECLELEKT
PYFLLPFQIELAVFIAQYYSANLSSVLSLFTPFKECDLVGLEKIEPVLNILSQTQTNALK
ELQKHSASLLFGDTGSGKTEIYMHAIAQTLEQKKSALLLVPEIALTPQMQQRLKKVFKEN
LGLWHSKLSQNQKKQFLEKLYSQEIKLVVGTRSALFLPLKELGLIIVDEEHDFSYKSHQS
PMYNARDLCLYLSHKFPIQVILGSATPSLNSYKRFKDKALVRLKGRYTPTQKNIIFEKTE
RFITPKLLEALQQVIDKNEQAIIFVPTRANFKTLLCQNCYKSVQCPFCSVNMSLHLKTNK
LMCHYCHFSSPIPKICSACQSEVLVGKRIGTMQVLNELEGLLKGAKIAILDKDHTSTPKK
LHNILNDFNAQKTNILIGTQMISKGHDYAKVSLAVVLGIDNIIKSNSYRALEEGVSLLYQ
IAGRSARQISGQVFIQSTETDLLKNFLEDYEDFLQYELQERCELYPPFSRLCLLEFKHKN
EEKAQQLSLKASQTLSLCLEKGVTLSSFKAPIEKIASSYRYLILLCSKNPLSLIKSVHAF
LKTAQNIPCSVNMDPVDIF
NT seq 1860 nt   +upstreamnt  +downstreamnt
atgttctatcacttaatcgctcctttaaagaacaaaaccccccctttaacttacttttct
aaagagcgacaccttaaaggggcgttagtcaatatctccttaaggaataaaacgcttttg
ggtgtcgttcttgaagaagtttcaaaaccctcttttgaatgcctagagttagaaaaaacc
ccttattttttactcccctttcaaatagagctcgctgtttttatcgctcaatattactcg
gctaatctttcttcagtcttaagccttttcaccccttttaaagaatgcgatttagtgggg
ttagaaaaaattgagcctgttcttaatatattaagccaaacgcaaacaaacgctttaaaa
gaattgcaaaaacattcagcaagcttgctctttggcgatacgggtagcgggaaaaccgag
atttatatgcatgcaatcgctcaaactttagagcaaaaaaaaagcgccttattgttagtg
ccagaaatcgctctcacccctcaaatgcaacaacgccttaaaaaggtctttaaagaaaat
ttaggcttgtggcatagcaaactctctcaaaatcaaaaaaaacaatttttagaaaagctt
tattcgcaagaaatcaaattagtggtaggtacacgaagcgcgttgtttttaccccttaag
gagttgggtttaatcattgtagatgaagagcatgacttttcttataaatctcatcaaagc
cctatgtataacgctagggatttatgcttgtatttatcccataaattccctattcaagtg
atcttaggctctgctacgccaagtttgaatagttacaaacgctttaaagataaggcttta
gtgcgcttaaaggggcgctacacgcctacgcaaaaaaacattatttttgaaaaaaccgag
cgttttatcacgcccaaactcctagaagcgctacaacaagttatagacaaaaacgagcaa
gccattatttttgtgcctacaagggctaatttcaaaaccttgctgtgccaaaattgctac
aaaagcgttcaatgccccttttgcagcgtgaatatgagtttgcatttaaaaaccaacaaa
ctcatgtgccattattgccatttttcaagccctatccctaaaatttgcagtgcatgccaa
agcgaagttttagtgggtaaaaggataggcaccatgcaagtgttgaacgagttggaaggc
cttttgaaaggcgctaaaatagcgattttagataaagatcacaccagcacaccaaaaaaa
ctccacaacattttaaacgatttcaacgctcaaaaaacgaatatcttaatcggcactcaa
atgataagcaaagggcatgattacgctaaagtgagtttggcggttgttttaggcatagac
aatatcattaaatctaatagttacagggctttagaagagggcgtgtcgttactttatcaa
atcgctgggaggagcgctaggcaaatttctggccaagtgttcattcaaagcaccgaaacc
gatctattaaaaaatttcttagaagattatgaagattttttacaatacgaattgcaagaa
aggtgcgaactctatccgcctttttcaaggttgtgtttgttggagtttaagcataaaaac
gaagaaaaagcccaacaattgagcctaaaagcctctcaaaccctttctttgtgtttagaa
aagggtgtaacgctctctagttttaaagcccccattgaaaaaatcgcctcttcttaccgc
taccttattttgttgtgttccaaaaaccctttaagcctaatcaaaagcgtgcatgcgttt
ttaaaaaccgcccagaatatcccttgcagcgtgaatatggatcctgtggatattttttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (20)   
   Pfam (20)   
All databases (29)   

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