KEGG   Helicobacter pylori OK310: HPOK310_1457
Entry
HPOK310_1457      CDS       T02542                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
hpyl  Helicobacter pylori OK310
Pathway
hpyl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hpyl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    HPOK310_1457 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hpyl03400]
    HPOK310_1457 (mfd)
Enzymes [BR:hpyl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     HPOK310_1457 (mfd)
DNA repair and recombination proteins [BR:hpyl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      HPOK310_1457 (mfd)
SSDB
Motif
Pfam: DEAD TRCF Helicase_C UvrB_inter CarD_TRCF_RID ResIII PAC_bac
Other DBs
NCBI-ProteinID: BAM98885
Position
1557463..1560462
AA seq 999 aa
MIQSSLYRALNKGFDYQILACKDFKESELAKEVISYFKPNTKAILFPEFRAKKNDDLRSF
FEEFLQLLGGLREFYQALENKQEAIIIAPISALLHPLPKKELLESFKITLLEKYNLKDLK
DKLFYYGYEILDLVEVEGEASFRGDIVDIYAPNSKAYRLSFFDMECESIKEFDPTTQMSL
KEDLLEIEIPPTLFSLNEQSYKDLKTKVEQSPLNSFSKDLTSFGLWFLGEKANDLLHAYK
SVISPRALEEIQELASLNELDGERFKFLKVLENPQGYEDLEIHAHALESFIALHSNRKIT
LLAPNKTILDNAISALEKSHIECVIAPFVLNFKTPDGIFISLNSFERKKKRQKSKLALNE
LNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYFGEDKLLLPVENLHLIARYVAQG
DSMPIKDRLGKGSFLKLKAKVKTKLLEIAGKIIELAAERNLILGKKMDTHLAELEVFKSH
AGFEYTSDQEKAIAEISKDLSSHKVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVV
PTTLLAHQHFETLRARFENFGVKVARLDRYASEKNKLLKAVELGLIDVLVGTHAILGAKF
KNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKIPP
TDRKPSRTFLKEKNDELLKEIIHRELRRNGQIFYIHNHIASISKVKTKLEDLIPKLKIAI
LHSQINAHESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGLADLHQLR
GRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIAYHDLEIRGGGNLLG
QDQSGHIKNIGYVLYTRMLEDAIYELSGGKKRLEKSVEIQLSVSAFLNPELIGSDSLRLD
LYRRLSLCENTDEVGQIHEEIEDRFGKIDDLSAQFLQIITLKILANQLGIIKLSNFNQNI
TITYSDEKKESLKAPSKDDNDILETLLKHLHAQISLKRH
NT seq 3000 nt   +upstreamnt  +downstreamnt
atgatccaatctagcctttatagagccttaaacaaaggctttgattatcaaatactcgct
tgtaaggattttaaagagtccgagctcgctaaagaagtcataagctattttaagccaaat
accaaagccattcttttcccagagtttagggctaaaaaaaacgatgatttgcgttcgttt
tttgaagaatttttacagcttttagggggtttaagggagttttatcaagccttagagaac
aagcaagaagcgatcatcattgcccctattagcgcgttattgcaccctttgcctaaaaaa
gaacttttagaaagctttaaaatcactcttttagaaaaatataaccttaaggatttaaaa
gacaagctcttttattatggttatgaaattttagacttagtggaagtggaaggcgaagcg
agctttaggggggatattgtggatatttatgcgcctaattctaaagcgtatcgcttgagt
ttttttgacatggagtgtgagagcattaaggaatttgaccccaccactcaaatgagcctc
aaagaagatttgttagaaattgaaatcccccccacgctttttagtttaaacgaacaatct
tataaggatctcaaaaccaaagtagagcaaagccccttaaatagcttttctaaagattta
accagttttggtttgtggtttttaggggaaaaagcaaacgatttgttgcatgcctataaa
agcgttataagccctagagctttagaagaaatccaagaattagcgagcttaaacgaattg
gatggtgagcgtttcaaatttttaaaggttttagaaaacccgcaaggctatgaagattta
gaaatccatgcgcatgccctagaaagctttatagctttgcattcaaatcgtaaaatcacg
ctcctagcccctaataaaacgattttagacaatgcgataagcgcgcttgaaaaaagccat
attgaatgcgtcatcgccccctttgtgttaaactttaaaacccctgatgggatttttatt
tcgctcaattcttttgaaaggaagaaaaaacgccaaaaatccaagctcgctttgaatgaa
ttgaatgcgggcgaatgggtggtgcatgatgattatggggtgggcgtgttttctcaatta
gtccaacacagcgttttagggagcaagagggattttttagaaatcgcttattttggcgaa
gacaaactgctattaccggtagaaaatttgcatctaatcgctcgctatgtggcgcaaggc
gatagcatgccaattaaagaccggctagggaaagggagttttctcaaactgaaagctaaa
gttaaaactaaacttttagagattgcaggcaagatcattgaattagcggctgaacgcaat
ttgatcttgggtaaaaagatggacacgcatttagcggagttggaagtctttaaatcgcat
gcggggtttgaatacacaagcgatcaagaaaaagccatcgctgaaatctcaaaggattta
agctctcataaagtgatggacagattattgagtggggatgtgggttttgggaaaacagaa
gtggcgatgcatgcgattttttgcgcgtttttgaacggctttcaaagcgctctagttgtg
cctaccactttattagcgcaccagcattttgaaactttaagggcgcgttttgaaaatttt
ggcgttaaagtggctcgtttggacaggtatgcgagcgaaaaaaacaagcttttaaaggcg
gtggaattagggctaattgatgtgcttgtaggcacgcatgcgattttaggcgcgaaattt
aaaaacttgggcttagtggtggtggatgaagagcataaatttggtgtgaaacaaaaagaa
gctttaaaagaattgagcaaaagcgtgcattttttaagcatgtccgctacgcctatcccg
cgcactctaaacatggcgctctctcaaattaaaggcatcagctctttaaaaatcccgccc
acagacaggaagcccagccgcacttttttgaaagaaaagaatgacgaactcttaaaagag
attattcatagagaattgcgccgtaacgggcaaattttttacatccataaccacatcgct
agcatttcaaaagtcaaaaccaagctagaagatttaatccctaaactcaaaatcgctatt
ttgcattcccaaattaacgctcatgagagcgaagaaatcatgctagagtttgctaaggga
aactatcaggttttattatgcacttctattgtggaatcagggattcatttgcctaacgct
aacacgattattatagataacgcgcaaaattttgggctggctgatttgcaccaattaaga
gggcgtgtggggaggggcaaaaaagaaggcttttgctatttcctcatagaagatcaaaaa
agtttgaatgaacaagccctaaaacgcttgctcgctttagaaaaaaattcgtatttaggc
agcggagagagtatcgcttatcatgatttagaaatcagggggggcgggaatttgctcggg
caagatcaaagcgggcatattaaaaatatcggttatgtgctctatacgcgcatgcttgaa
gatgcgatttatgaattgagtggggggaaaaaaaggcttgaaaagagcgtagaaatccaa
ttgagcgtgagcgcttttttaaaccctgaactcattggaagcgatagtttgagattggat
ctataccgccgtttgagtttgtgtgaaaatacagatgaggtggggcaaatccatgaagaa
atagaagataggtttggcaaaatagacgatttgagcgctcaatttttgcaaatcattacg
cttaaaattctagccaaccagcttggcatcattaaactttctaatttcaatcaaaacatc
accattacttatagcgatgaaaagaaagaaagcctaaaagccccaagcaaagacgataac
gatattttagaaacccttttgaaacatttgcacgctcaaatttctttaaagcggcactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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