KEGG   Helicobacter pylori OK113: HPOK113_1154
Entry
HPOK113_1154      CDS       T02510                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta/beta'
  KO
K13797  DNA-directed RNA polymerase subunit beta-beta' [EC:2.7.7.6]
Organism
hpyo  Helicobacter pylori OK113
Pathway
hpyo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:hpyo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    HPOK113_1154 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hpyo03021]
    HPOK113_1154 (rpoB)
   03400 DNA repair and recombination proteins [BR:hpyo03400]
    HPOK113_1154 (rpoB)
Enzymes [BR:hpyo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     HPOK113_1154 (rpoB)
Transcription machinery [BR:hpyo03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     HPOK113_1154 (rpoB)
DNA repair and recombination proteins [BR:hpyo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      HPOK113_1154 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb1_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb1_4 RNA_pol_Rpb2_1 RnfC_N
Other DBs
NCBI-ProteinID: BAM97062
Position
complement(1234633..1243305)
AA seq 2890 aa
MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKDGKESGIEEVFKSIFPIQ
DEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDI
KEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLNKLIYTGQIIP
DRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYL
IPFASLDANQRMEFDLKDPQGKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHLA
EPVMVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFSADSESLKL
LKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHK
LGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGL
VKMQKTIKDKLTTMSGTFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGF
IEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNE
KSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEK
IIARDSWGAIKANRAGVVEKIDSKNIYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQVPI
VKVGDKVGAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERITKDDIFTS
THIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPK
GEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSAYE
EEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPKEEIASIN
RFTLAGLVKKYSKEVQNHYEVTKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKL
YIATKRKLKVGDKMAGRHGNKGIVSNIVPIADMPYTADGEPVDIVLNPLGVPSRMNIGQI
LEMHLGLVGKEFGKQIASMLEDKTKDFAKELRAKMLEIANAINEKDPLTIHVLENCADEE
LLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVG
YMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLK
EMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIFGDDVDEDG
APKPIVIKEDDRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKI
FGPTKDYECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSL
PSRIGTLLGVKMKDLERVLYYEAYIVKEPGEAAYDNEGTKLVMKYDILNEEQYQNISRRY
EDRGFVAQMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSG
NRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEII
VRNEKRMLQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSG
RSVIVVGPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWEC
LQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDSKAIQLHPLVCSAFNADFDGDQMAVHVP
LSQEAIAECKVLMLSSMNILLPASGKAVAIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVN
EIITAIDTKELDIHAKIRVLDQGNIIATSAGRMIIKSILPDFIPTDLWNRPMKKKDIGVL
VDYVHKVGGIGITATFLDNLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAKVEVKKI
QQQYDQGLLTDQERYNKIIDTWTEVNDKMSKEMMSAIAQDKEGFNSIYMMADSGARGSAA
QIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGSRKGLADTALKTANAGY
LTRKLIDVSQNVKVVSDDCGTHEGIEITGIAVGSELIEPLEERIFGRVLLEDVIDPITNE
ILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKAPKGVCAKCYGLNLGEGKMSYPGEAV
GVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGFVRFYNLRTYTNKEGKNII
ANRRNASILVVEPKIKAPFDGELRIETVYEEVVVSVKNGDQEAKFVLRRSDIVKPSELAG
VGGKIEGKVYLPYASGHKVHKGGSIADIIQESWNVPNRIPYASELLVKDNDPIAQDVYAK
EKGTIKYYVLEANHLERTHGIKKGDIVSEKGLFAVIADDNGREAARHYIARGSEILIDDN
SEVSANSVISKPTTNTFKTIATWDPYNTPIIAGFKGKVGFVDIIAGVTVAEKEDENTGIT
SLVVNDYIPSGYKPSLFLEGVNGEEVRYFLEPKTSIAISDGVSVEQAEVLAKIPKATVKS
RDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDGRPMDYFV
DKGKQILVHADEFVHAGEAMTDGVVSSHDILRISGEKELYKYIVSEVQQVYRRQGVSIAD
KHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIAEPVLLGIT
RAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGMYKNKKIV
LRTLENDPKF
NT seq 8673 nt   +upstreamnt  +downstreamnt
atgtcaaaaaaaattcccctaaaaaaccgcttgagagctgattttacaaaaaccccaaca
gatttagaagtccctaatttattattattacaacgagacagctatgattctttcttgtat
tctaaagatggtaaagagagcgggattgaagaggtttttaaatccattttccctatccaa
gatgagcataaccgcatcactttagaatacgcaggttgcgaatttggcaagtctaaatac
actgttagagaagcgatggagaggggcattacctactctatcccccttaaaattaaagtg
cgcttgattttgtgggaaaaagacaccaaaagtggcgaaaagaacggcattaaggatatt
aaagaacaaagcattttcattcgtgagatccctttgatgacagaacgcacttcatttatt
atcaatggggtggagcgcgtggtcgtcaatcaactccacagaagccccggtgtgattttc
aaagaagaagagtccagtacttctttaaacaagctcatttacacagggcaaatcatccct
gataggggttcgtggttgtattttgaatacgattctaaagatgttttatacgctcgtatc
aacaaacgccgtaaagtgcctgtgactattttattcagggcgatggattatcaaaaacaa
gacattatcaaaatgttctacccgcttgttaaagtgcgttatgaaaacgataagtatttg
atcccgtttgcttcattagatgccaatcaaagaatggaatttgacttgaaagatcctcaa
ggcaaggttattcttttagcaggcaaaaagctcacttcaagaaagattaaagagcttaaa
gaaaaccatttagaatgggtggaataccctatggatattttactcaatcgccatttagct
gagcctgttatggtagggaaagaagtcttattggacatgctcactcagctagataaaaac
aaattagaaaaaatccacgatttaggcgtgcaagaatttgtgatcatcaacgatctagcg
ttagggcatgacgcttctattatccattctttttcagccgattctgagtctttgaaattg
ctcaagcaaaccgaaaaaattgacgatgaaaacgctctagcggcgattcgtatccataag
gttatgaagccaggcgatcccgttacgactgaagtggctaagcagtttgtcaaaaaactt
ttctttgatccagaacgctatgatttgaccatggtgggccgcatgaaaatgaatcacaag
ttaggcttgcatgtgcctgattacattacgactttaacgcatgaagatattatcaccacc
gttaaatatctcatgaagatcaaaaacaatcagggcaagattgatgacagggatcactta
ggcaatcgtaggatcagggcggtaggggaattgttggccaatgaattgcattcaggctta
gtgaaaatgcaaaagaccattaaagacaagctcactaccatgagcgggacttttgattcg
ctcatgccccatgacttggtcaattctaaaatgatcacaagcaccatcatggaatttttc
atgggcggccagctctcgcaatttatggatcaaaccaaccccttgagtgaagttacgcac
aagcgccgcctttcagcgctcggtgaagggggattggtgaaagatagggtagggtttgaa
gctagggatgtgcaccccacgcattatggccgaatttgccccattgaaaccccagaaggt
caaaatatcggtttgatcaacaccctttccactttcacgagagtgaatgatttaggcttt
attgaagccccttataaaaaggttgtggatggtaaggtagtgggtgagacgatttatttg
accgctattcaagaagacagccacatcatcgctcccgcaagcacccccattgatgaagag
ggtaatattttaggcgatttgattgaaacgcgcgtggaaggcgagatcgttttaaacgaa
aaaagcaaagtaaccttaatggatttaagctctagcatgctagtaggggtagctgcatcg
ctcattcctttcttagagcatgatgacgccaaccgtgccttaatggggactaacatgcag
cgccaagcggtccccttattaagaagcgacgctcccattgtaggcacagggattgaaaaa
attatcgctagggattcttggggagcgatcaaagccaatcgcgcaggcgttgtagaaaaa
attgattctaaaaatatttatattttaggcgaaggcaaagaagaagcctatattgatgcg
tattctttgcaaaaaaacttgcgcaccaaccaaaacaccagtttcaatcaagtccctatc
gttaaagtgggcgataaagtgggagccgggcaaatcatcgctgatggccctagcatggat
agaggcgagttagcgttagggaaaaatgtgcgcgtggcgttcatgccttggaatggctat
aactttgaagacgctatcgtggtgagtgagcgcatcactaaagatgatattttcacttcc
acccacatttatgaaaaagaagtggatgctagggagcttaagcatggcgtggaagaattt
accgctgacattcctgatgtgaaagaagaagcgctcgctcatcttgatgaaagcgggatc
gttaaagtgggcacttatgtgagcgctggcatgattttagtgggtaagacttctcctaaa
ggcgagattaaaagcacgcctgaagagcggcttttaagggctatttttggggataaagcc
gggcatgtggtcaataagagtttgtattgccctccaagtttggaaggcacggtgattgat
gtgaaagtcttcactaaaaaaggctatgagaaagacgcgcgggttttgagcgcgtatgaa
gaagaaaaagccaagcttgatatggagcattttgaccgcttgaccatgctcaatagagaa
gaattgttgcgcgttagttcgctcctttctcaagcgattttagaagagcctttcagccat
aatggcaaggattataaagaaggcgatcaaatccctaaagaagaaatcgcttcaatcaac
cgcttcactttggctggtttggtgaaaaagtattctaaagaagtgcaaaaccactatgaa
gtcactaaaaacaatttcttagagcaaaagaaagtcttgggcgaagagcatgaagaaaag
ctttctattttagaaaaagatgatattttgcctaatggcgtgatcaaaaaagtcaagctc
tatatcgctacaaaacgaaagcttaaagtgggcgataaaatggcaggaaggcatgggaat
aaagggattgtgtctaatatcgtgccgattgcagatatgccttataccgctgatggcgag
cctgtagatattgtcttaaaccctttaggcgtgccaagccgcatgaatatcgggcagatt
ttggaaatgcatttaggcttagtggggaaagagtttgggaagcaaatcgctagcatgcta
gaggataaaaccaaagattttgccaaagaattgcgcgctaaaatgctagaaatcgctaac
gccattaatgaaaaagaccccttgacaatccatgtgcttgagaattgtgctgatgaagag
cttttggaatacgcaaaagattggagcaagggcgttaagatggctatccctgtgtttgaa
ggcatctcgcaagaaaaattttataagctatttgaattagccaagatcgctatggatggc
aaaatggatctgtatgatgggcgcacaggcgaaaaaatgagggagcgcgtgaatgtgggc
tatatgtatatgatcaaactccaccatttagtggatgaaaaagtccatgccagaagcaca
ggcccttatagcttggtaacgcaccagcctgttgggggtaaagcactctttgggggtcaa
aggtttggggaaatggaagtgtgggcgctagaagcttatggtgcagcacacactctaaaa
gaaatgctcaccattaaatccgatgatattagaggcagagagaacgcttatagggctatc
gctaaaggtgagcaagtgggcgagagtgaaatccctgagactttctatgttttgactaaa
gaattgcaatcgctcgctttggatattaatatttttggggacgatgtggatgaagatgga
gcgcctaaacccattgtcattaaagaagatgacaggcctaaagattttagctctttccag
ctcacactagccagccctgaaaaaatccattcttggagttatggggaagtcaaaaagcca
gaaacgatcaattatcgcaccctaaaacctgaacgagacggcttgttttgcatgaaaatc
tttggtcccactaaagattatgaatgcttgtgcggtaaatacaaaaagcctcgcttcaaa
gacattggcacatgcgaaaaatgcggcgtggcgatcacgcactccaaagtcaggcgtttt
agaatggggcatattgaattagccactcctgtagcgcatatttggtatgtcaattccttg
cctagccgtatcggcacgcttttaggcgttaagatgaaagacttagagcgcgtgttgtat
tatgaagcttatatcgttaaagagccaggcgaagccgcttatgacaatgaaggcactaag
cttgtgatgaaatacgatattttgaatgaagagcagtatcaaaatatctcacgaagatac
gaagacaggggctttgtagcgcaaatgggcggcgaagcgatcaaggatttgttagaagaa
attgatttgatcaccttattgcagagtttgaaagaagaagtgaaagacaccaattccgat
gcgaaaaagaaaaaactcattaagcgtttgaaagtggtagaaagctttttaaattctggt
aacagacctgaatggatgatgctcacggtgttaccagtattgccgccggatttaaggcct
ttagtcgcgttagatggtgggaagtttgcagtcagcgatgtgaatgaattgtatcgtcgt
gtcatcaatcgtaaccaacgcttgaaacgcctaatggagcttggggcgccagaaatcatt
gtgcgcaatgaaaaaaggatgttgcaagaagccgtggatgtgctttttgataacggccgt
agcactaatgcggttaaaggggctaacaaacgccctttaaaatcgctcagtgaaatcatt
aaaggcaagcaagggcgtttcaggcaaaaccttttaggtaagcgcgtggatttttcaggc
agaagcgtgattgtggttgggccaaatctcaagatggacgagtgcggattgcctaaaaac
atggcgttagaactcttcaaaccacatttattatccaagcttgaagagagaggctatgcc
accacgctcaaacaggctaaacgcatgattgaacaaaaaagcaatgaagtgtgggagtgc
ttgcaagaaatcacagaggggtatccggtgttgctcaaccgcgctcctaccttgcacaag
caatccattcaagcgttccatccaaagcttattgacagcaaagcgatccaattgcacccg
ttagtgtgttcagcgttcaacgccgattttgacggggatcaaatggcggtgcatgtgcct
ttaagccaggaagcgatcgctgaatgcaaggtgctgatgctaagctctatgaatatcctt
ttgcccgctagcggtaaagccgtagccattcctagccaggatatggttttagggctttat
tatctttctttagaaaagagcggagtcaagggtgagcataaacttttttctagcgtgaat
gaaatcatcaccgctattgacacgaaagaattagacatccacgcaaagattagggtttta
gatcaagggaatattatcgctacgagcgcggggcgcatgatcattaagtccattttgcct
gattttatccctactgatttgtggaacagacccatgaagaaaaaagatattggcgtgctt
gtggattatgtgcataaagtcggtggtatcggtattactgcaacctttttggataattta
aaaacgcttggctttaggtatgcgactaaggctggtatttctatctctatggaagatatt
atcactccaaaagacaagcaaaaaatggtggaaaaagctaaagtagaggttaaaaaaatc
cagcaacaatacgatcaagggttgctcactgaccaagagcgttacaataagatcattgac
acttggactgaagtcaatgacaaaatgagtaaagaaatgatgagcgctatcgcgcaagat
aaagagggctttaactctatttatatgatggcagatagcggagcaagggggagtgcggcg
caaatccgtcagctttcagcgatgaggggccttatgacaaagccagatggcagtatcatt
gaaacgcccattatttctaactttaaagaggggttgaatgtcttagaatactttaactcc
acgcatggctctagaaagggattagcggatacagcgttgaaaacagccaatgcggggtat
ttgacaagaaaactcattgatgtttcgcaaaatgtcaaggtggtgtctgatgattgcggc
acgcatgaagggattgaaatcacgggtattgcggtggggagtgagctgattgaaccttta
gaagagcgtatttttgggcgcgttttattagaagatgtgatcgatcccattacaaatgaa
atcttgctttatgcagacactttgattgatgaagagggtgctaaaaaggtggttgaagct
gggattaaatccattacgatccgcaccccagtaacttgtaaagcaccaaagggcgtgtgc
gcgaaatgctatggtttgaatttgggcgaaggcaagatgagttatccgggtgaagcggtg
ggcgtggtagctgcgcaatctatcggggagcctggaactcagctcactttaaggactttc
catgtgggcgggacagcgagtaggagtcaggatgagcgcgaaattgtagcgagcaaagaa
ggttttgtgcgtttctacaaccttaggacctacacgaataaagagggtaaaaacattatc
gctaaccgccgtaacgcttctattttagtggtagagcctaagattaaagcgccttttgat
ggggaattacgcattgaaacggtctatgaagaagtcgttgtgagcgtgaaaaatggcgat
caagaagctaaatttgttttaagaagaagcgacattgtcaagccaagcgaattggccggc
gttggcggtaagattgaggggaaagtgtatttgccttatgctagtgggcataaggtgcat
aagggggggagtatcgctgatattatccaagagagttggaatgtgcctaatcgcatccct
tatgcgagcgaattgctagtcaaggataatgatcctattgcgcaagatgtgtatgccaaa
gaaaaaggcacaatcaaatactatgttttagaggccaatcatttagagcgcacccatggg
atcaaaaagggcgatattgtgagcgaaaaaggcttgtttgcggtgatagctgatgataat
ggtagggaagccgctcgccattatatcgctaggggttctgagatcttgattgatgataat
agtgaagtgagcgctaatagcgtgatttctaaacccacgactaacactttcaaaacgatt
gccacatgggatccttacaacacccctatcattgcgggctttaaaggtaaggtgggtttt
gtggatattatcgcaggggttacggtcgctgaaaaagaagacgaaaataccggtatcaca
agcttagtggtgaatgattacattccaagcggatacaaaccaagcttgtttttagagggg
gttaatggcgaagaagtgcgttatttcctagagccaaaaacttctatcgctattagcgat
ggcgttagcgtggagcaggctgaagtgttagcgaaaatccctaaagcgaccgttaaatcc
agagatattaccgggggtctcccaagggtttcggaactctttgaagcgagaaaacccaag
cctaaagatgtggcgatcctttctgaagttgatgggatcgtgagttttggcaaacccatt
cgcaataaagaacacatcatcgtaacctctaaagatggccgtcccatggattattttgtg
gataagggcaagcaaattttagtgcatgctgatgaatttgtgcatgcgggagaagcgatg
acggatggcgtggtttcaagccatgatattttaaggatcagcggcgaaaaagagctttat
aaatacattgtgagtgaagttcagcaagtgtatcgcaggcagggggtaagcattgcggat
aagcacattgagatcattgtttctcaaatgctaaggcaagtgcgtattttagacagcgga
gatagcaaatttattgaaggggatttagtcagtaaaaaactcttcaaagaagaaaacgct
cgtgtgatcgctttaaaaggtgagccagcgattgctgaaccggtgcttttagggatcacc
agagcggctattgggagcgatagcatcatctcagcggcctctttccaagaaacgactaaa
gttttaacagaagccagtattgctatgaaaaaagactttttagaagacttgaaagagaat
gtggtgttggggaggatgatccctgtgggaacgggcatgtataagaataaaaaaatcgtg
ctaagaacgcttgaaaatgaccctaaattttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (12)   
   Pfam (12)   
All databases (22)   

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