KEGG   Herbaspirillum rubrisubalbicans: Hrubri_3178
Entry
Hrubri_3178       CDS       T04238                                 
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
hrb  Herbaspirillum rubrisubalbicans
Pathway
hrb03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hrb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Hrubri_3178 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hrb03400]
    Hrubri_3178 (uvrB)
DNA repair and recombination proteins [BR:hrb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Hrubri_3178 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Hrubri_3178 (uvrB)
SSDB
Motif
Pfam: UvrB_inter Helicase_C UvrB ResIII UVR DEAD AAA_30 Kinesin Microtub_bd UvrD-helicase FlaG
Other DBs
NCBI-ProteinID: ALU90339
UniProt: A0A0U3LL61
Position
3708859..3710940
AA seq 693 aa
MAELTPINPELDESKFVTFPDSPFKLYQVFPPAGDQPAAIDKLVEGVNDGLFYQTLLGVT
GSGKTYTMANTIARLGRPAIVFAPNKTLAAQLYSEFREFFPHNAVEYFVSYYDYYQPEAY
VPQRDLFIEKDSSINEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMILTL
RAKDKVSQRDVIARLIQMQYTRNEVDFGRGTFRVRGDTIDVFPAEHAELAVRIETFDDEI
DSLQLFDPLTGRVRQKIPRFTIYPGSHYVTPRSTVLRAIETIKEELAERLEFFRKENKLI
EEQRLEQRTRFDIEMMTEIGFTKGIENYSRHLSGGKPGDPPPTLVDYLPKDALMFLDESH
VLIGQLNGMYNGDRARKVNLVDYGFRLPSALDNRPLKFDEFEKKMRQTVFVSATPADYEN
THADQVVEQVVRPTGLVDPVIAVRPATTQVDDLMQEIHDRIAKNERVLVTTLTKRMAEQL
TEFLSDNGIKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILD
ADKEGFLRSERSLIQTIGRAARNLNGMAILYGDVVTDSMHKAISETERRRAKQLAFNEAN
GIVPTGIKKEIRELIDGIFNPAQARTELMVAEEKKNYESMSEKQISKEIKRLEKQMQEHA
KNLEFEKAAAARDQLHLLKQQLFGAPGSDTAVA
NT seq 2082 nt   +upstreamnt  +downstreamnt
atggctgaactgacccccatcaatcccgagctggacgagagcaagttcgtcaccttcccc
gactcgcccttcaagctctaccaggtcttcccaccggcgggcgaccagccggcggccatc
gacaagctggtcgaaggggtcaacgacggcctgttctaccagacgctgttaggggtgacc
ggctcgggcaagacctacaccatggccaataccattgcccgcctgggccgcccggccatc
gtgttcgcccccaacaagacgctggcggcgcagctctacagcgaattccgcgaattcttc
ccgcacaatgcagtggaatatttcgtcagctactacgactactaccaaccggaagcctac
gtgccccagcgcgacctgttcatcgagaaggattcctcgatcaacgagcacatcgaacag
atgcgcctgtcctgcaccaagtcgctgatggaacggcgcgacgtggtgatcgtggcgacc
gtctcggccatctacggtatcggtaaccccaacgaataccaccagatgatcctgaccctg
cgcgccaaggacaaggtctcgcagcgcgacgtcatcgcccgcctgatccagatgcagtac
acccgcaatgaagtggacttcggacgcggcaccttccgcgtgcgcggcgacaccatcgac
gtcttcccggccgaacacgccgaacttgccgtgcgcatcgagaccttcgacgatgagatc
gacagcctgcaactgttcgatccgctcaccggccgcgtgcgccagaagattccgcgcttc
accatctaccccggttcgcactacgtcacgccgcgctcaaccgtgttgcgcgccatcgag
accatcaaggaagaactggccgagcgcctggaattcttccgcaaggaaaacaagctcatc
gaagaacagcggctggaacagcgcacccgcttcgacatcgagatgatgaccgagatcggc
ttcaccaagggcatcgagaactactcgcgccacctctccggtggcaagccgggcgatccg
ccgccgacgctggtggattacctgcccaaagatgcgctgatgttcctggatgaatcgcac
gtgctgatcggtcagttgaacggcatgtacaacggcgatcgcgcgcgcaaggtgaacctg
gtggactacggtttccgcctgccctcggcgctggacaaccggcccctgaagttcgatgaa
ttcgaaaagaagatgcgccagaccgtctttgtctcggccaccccggccgactatgaaaac
acccacgccgaccaggtggtggaacaggtggtgcgcccgaccggcctggtcgatccggtc
atcgcggtgcgcccggccaccactcaggtggacgacctgatgcaggagatccacgaccgc
atcgccaagaacgagcgggtgctggtgaccacgttgaccaagcgcatggccgagcagttg
accgaattcctgtccgacaatggcatcaaggtgcgctacctgcacagcgacatcgatacc
gtggagcgcgtggaaatcatccgcgacctgcgcctgggtaccttcgacgtactggtgggc
atcaacctgctgcgcgaaggtctggacattcccgaagtctcgctggtggcgatcctggat
gcggacaaggaaggcttcctgcgttccgagcgcagtctgatccagaccatcggccgcgcc
gcccgtaacctcaacggcatggccattctctatggcgatgtggtgaccgattccatgcac
aaggccatcagcgaaaccgaacggcggcgcgccaagcaactggccttcaacgaagccaat
ggcatcgtgcccaccggcatcaagaaggaaatccgcgagctcatcgatggtatcttcaac
ccggcccaggcgcgcaccgagttgatggtggccgaggaaaagaagaactacgaatccatg
agcgaaaagcagatcagcaaggaaatcaagcgcctggaaaagcagatgcaggaacacgcc
aagaacctggagttcgaaaaggcggccgccgcgcgcgaccagttgcacctgctgaagcag
cagctcttcggcgcgcccggcagcgatacggccgtggcctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system