KEGG   Helobdella robusta: HELRODRAFT_75246
Entry
HELRODRAFT_75246  CDS       T03272                                 
Name
(RefSeq) hypothetical protein
  KO
K15544  RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
Organism
hro  Helobdella robusta
Pathway
hro03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:hro00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    HELRODRAFT_75246
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hro03021]
    HELRODRAFT_75246
   03019 Messenger RNA biogenesis [BR:hro03019]
    HELRODRAFT_75246
Enzymes [BR:hro01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.3  Phosphoric-monoester hydrolases
    3.1.3.16  protein-serine/threonine phosphatase
     HELRODRAFT_75246
Transcription machinery [BR:hro03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     HELRODRAFT_75246
Messenger RNA biogenesis [BR:hro03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     HELRODRAFT_75246
SSDB
Motif
Pfam: Ssu72
Other DBs
NCBI-GeneID: 20215127
NCBI-ProteinID: XP_009014029
JGI: Helro1_75246
UniProt: T1G229
Position
Unknown
AA seq 191 aa
MDLRFAIICSSNQNRSMEAHNFLNKKGLNVRSFGSGTHVKLPGLTPDRPNIYDFNTTYDD
MYRDLMNKDKQMYTQNGLLHMLDRNRRIKPKPERFQTSKEKFDVIICCEERVYDQILEDI
ENREKLDISPVHIINIDIQDNHEEATVGAIMICELCTLLNQCEDLDNEIDELLQEFEHQC
RRTLLHTIAFY
NT seq 576 nt   +upstreamnt  +downstreamnt
atggatttgaggtttgccatcatttgttccagcaatcaaaatcggagcatggaagcccac
aattttttaaataaaaagggcttaaacgttcgttcatttggaagtggaacacacgtgaaa
ttgccaggcttaacacccgatagacccaacatttacgactttaacacgacttacgacgat
atgtacagagacctcatgaacaaagacaaacaaatgtacacgcaaaatggtttgttgcac
atgctagatagaaacaggagaatcaaaccaaagcctgaaagatttcaaacctctaaggaa
aagtttgatgtgatcatctgctgtgaagaaagagtctacgatcaaattcttgaagatatt
gaaaatcgagaaaaactggacatatctccagtgcacataatcaacatagacattcaagac
aaccatgaagaggccacagtaggcgccatcatgatttgtgaactttgtactctattgaac
caatgtgaagacttggacaacgaaatagatgaactattacaggagtttgagcaccaatgc
agaagaactttgctacataccattgctttctattga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (30)   

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