KEGG T01001: 65110

Homo sapiens (human): 65110

Entry

65110 CDS T01001

Gene name

UPF3A, HUPF3A, RENT3A, UPF3

Definition

UPF3 regulator of nonsense transcripts homolog A (yeast)

Orthology

K14328

regulator of nonsense transcripts 3

Organism

hsa Homo sapiens (human)

Pathway

hsa03013	RNA transport
hsa03015	mRNA surveillance pathway

Module

hsa_M00430

Exon junction complex (EJC)

Class

Genetic Information Processing; Translation; RNA transport [PATH:hsa03013]
Genetic Information Processing; Translation; mRNA surveillance pathway [PATH:hsa03015]

SSDB

Motif

Pfam:

Smg4_UPF3

Other DBs

NCBI-GI:

NCBI-GeneID:

OMIM:

HGNC:

HPRD:

Ensembl:

Vega:

UniProt:

Structure

PDB:

2L08

Position

13q34

AA seq 476 aa
MRSEKEGAGGLRAAVAARGPSGREKLSALEVQFHRDSQQQEAETPPTSSSGCGGGAGKPR
EEKRTALSKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRN
PDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKF
LETYCVEEEKTSANPETLLGEMEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERR
RRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIKLLKKPEKGEEPTTEKPKE
RGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSDKEHRDVERSQEQESEAQR
YHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGKKGSQDSGAPGEAMERLGRAQRC
DDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGSGTGPEKREEAE

NT seq 1431 nt +upstreamnt +downstreamnt
atgcgctcggaaaaggagggggccggaggccttcgggcggccgttgccgcgcggggcccg
agcgggagggagaagctgtcggccctagaagtgcagttccaccgcgactcgcagcagcag
gaggctgagacgccgccaacttcgtcctccggttgcgggggcggtgcgggcaaacctcgc
gaggagaagaggacggccctgagcaaggtggtcatccgccgcctgcctccgggcctcacc
aaggagcagctggaggagcagctgcgcccgctgccagcacacgactacttcgagttcttc
gccgccgacctgagtctttatcctcatctctactcaagagcatacattaattttaggaat
cctgatgacatccttctttttagagatcgttttgatggatatatcttccttgacagcaaa
ggcctagaatatcctgcagtggtagagtttgctccattccagaagatagccaaaaagaag
ctgagaaaaaaagatgccaagactggaagcatcgaagatgatccagaatataagaagttt
ttagaaacctactgtgtggaggaagagaagaccagtgccaaccctgagactctgctgggg
gagatggaggcgaagacaagagagctcattgctagaagaaccacacctcttttggaatat
attaaaaatagaaaattagaaaagcagagaattcgagaagagaagcgagaagaacggagg
aggagagagttagaaaagaaacgtttgcgggaagaggaaaaaagaagaagaagagaagaa
gaaagatgcaaaaaaaaagagacagataaacagaagaaaattgcagagaaagaagtaagg
attaagcttcttaagaaaccagaaaagggagaggaaccaaccacagagaaaccaaaagaa
agaggagaggagattgatactggaggtggcaagcaggaatcctgtgcccccggtgcagtc
gtaaaagccaggcccatggaaggctcgctggaggagccccaggagacgtcacacagcggc
agtgataaagagcacagggatgtggagagatctcaagaacaagaatctgaagcacaaaga
taccatgtggatgacggcaggaggcacagagctcaccacgagcctgaacggctttccaga
aggagtgaggatgagcagagatgggggaaaggacctggccaagacagagggaagaagggg
agccaggacagcggggctccgggggaggccatggagagactgggaagagcgcagaggtgt
gacgacagtccagcacccagaaaagagcgactggcaaacaaggaccggccagccttgcag
ctgtatgatccaggagctcgcttccgagcgcgagagtgtggcggaaacaggaggatctgc
aaggcagaaggttcggggactggtcctgagaagagggaagaggcagagtga

All links

Pathway (3)   
   KEGG PATHWAY (2)   
   KEGG MODULE (1)   
Disease (1)   
   OMIM (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (8)   
   UniGene (1)   
   HGNC (1)   
   HPRD (1)   
   ENSEMBL-HSA (1)   
   OC (1)   
   VEGA (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (24)   
   RefSeq(nuc) (2)   
   GenBank (11)   
   EMBL (11)   
3D Structure (1)   
   PDB (1)   
Protein domain (1)   
   Pfam (1)   
All databases (50)   

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