KEGG   Homo sapiens (human): 9416
Entry
9416              CDS       T01001                                 
Symbol
DDX23, PRPF28, SNRNP100, U5-100K, U5-100KD, prp28
Name
(RefSeq) DEAD-box helicase 23
  KO
K12858  ATP-dependent RNA helicase DDX23/PRP28 [EC:3.6.4.13]
Organism
hsa  Homo sapiens (human)
Pathway
hsa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    9416 (DDX23)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hsa03041]
    9416 (DDX23)
Spliceosome [BR:hsa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    9416 (DDX23)
 Complex C
   U5 SnRNP specific factors
    9416 (DDX23)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19
Other DBs
NCBI-GeneID: 9416
NCBI-ProteinID: NP_004809
OMIM: 612172
HGNC: 17347
Ensembl: ENSG00000174243
UniProt: Q9BUQ8 B3KY11
Structure
Position
12:complement(48829756..48852163)
AA seq 820 aa
MAGELADKKDRDASPSKEERKRSRTPDRERDRDRDRKSSPSKDRKRHRSRDRRRGGSRSR
SRSRSKSAERERRHKERERDKERDRNKKDRDRDKDGHRRDKDRKRSSLSPGRGKDFKSRK
DRDSKKDEEDEHGDKKPKAQPLSLEELLAKKKAEEEAEAKPKFLSKAEREAEALKRRQQE
VEERQRMLEEERKKRKQFQDLGRKMLEDPQERERRERRERMERETNGNEDEEGRQKIREE
KDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASEDTSIDYNPLYKERHQVQLLG
RGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAKQRWDDRHWSQK
KLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQ
AIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTREL
AQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVL
SRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYR
QTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILE
QGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVA
TDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELK
QAILESPVSSCPPELANHPDAQHKPGTILTKKRREETIFA
NT seq 2463 nt   +upstreamnt  +downstreamnt
atggcaggagagctggctgacaaaaaggaccgtgatgcatcaccttccaaggaggaaagg
aagcgatcacggactcctgacagagagcgggatagagaccgggaccggaagtcttcccca
tctaaagatagaaagcggcatcgttcaagggatagacgtcgaggaggcagccgttctcgc
tctcgttcccgttccaaatctgcagaaagagaacgacggcacaaagaacgagaacgagat
aaggagcgggatcggaataagaaggaccgagatcgagacaaggatgggcacagacgggac
aaggaccgtaaacgatccagcttatctcctggtcgaggaaaagactttaaatctcggaag
gacagagactctaagaaggatgaagaggatgaacatggtgataagaagcctaaggcccag
ccattatccctggaggagcttctggccaagaaaaaggctgaggaagaagctgaggctaag
cccaagttcctctctaaagcagaacgagaggctgaagctctaaagcgacggcagcaggag
gtggaagagcggcagaggatgcttgaagaagagaggaagaaaaggaaacagttccaagac
ttgggcaggaagatgttggaagatcctcaggaacgggaacgtcgggaacgcagggagagg
atggaacgggagaccaatggaaatgaggatgaggaagggcggcagaagatccgggaagag
aaggataagagcaaggaactgcatgccattaaggagcgttacctgggtggcatcaaaaag
cggcgccgaacgagacatctcaatgaccggaaatttgtttttgagtgggatgcatctgag
gacacatccattgactacaaccccctgtacaaagaacggcaccaggtgcagttgttaggg
cgaggcttcattgcaggcattgacctcaagcagcagaagcgagagcagtcacgtttctat
ggagacctaatggagaagaggcgaaccctggaagaaaaggagcaggaggaggcaagactc
cgcaaacttcgtaagaaggaagccaagcagcgctgggatgatcgtcattggtctcagaaa
aagttagatgagatgacggacagggactggcggatcttccgtgaggactacagcatcacc
accaaaggtggcaagatccccaatcccatccgatcctggaaagactcttctctgccccca
cacatcttggaggtcattgataagtgtggctacaaggaaccaacacctatacagcgtcag
gcaattcccattgggctacagaatcgtgacatcattggtgtggctgagactggcagtggc
aagacagcagccttcctcatccctctgctggtctggatcaccacacttcccaaaattgac
aggatcgaagagtcagaccaaggcccttatgccatcatcctggctcccacccgtgagttg
gctcaacagattgaggaagagaccatcaagtttgggaaaccgctaggtatccgcactgtg
gctgtcattggtggcatctccagagaagaccagggcttcaggctgcgcatgggttgtgag
attgtgattgctacccctgggcgtttgattgatgtgctggagaaccgctacctggtgctg
agccgctgtacctatgtggttctggatgaggcagataggatgattgacatgggctttgag
ccagatgtccagaagatcctggagcacatgcctgtcagcaaccagaagccagacacggat
gaggctgaggaccctgagaagatgctggccaactttgagtcgggaaaacataagtaccgc
caaacagtcatgttcacggccaccatgcccccagcggtggagcgtctggccaggagctat
cttcggcgacctgctgtggtgtacattggctccgcaggcaagccccatgagcgtgtggaa
cagaaggtcttcctcatgtcagagtcagaaaagaggaaaaagctgctggcaatcttggag
caaggctttgacccacccatcattatttttgtcaaccagaagaagggctgcgacgtgttg
gccaaatccctggagaagatggggtacaatgcttgcacactgcacggtggaaaaggccag
gagcagcgagagtttgcgttgtccaacctcaaggctggggccaaggatattttggtggct
acagatgtggctggtcgtggtattgacatccaagatgtgtctatggttgtcaactatgat
atggccaaaaatattgaagattacatccaccgcattggccgcacgggacgagcaggcaag
agtggggtggccatcaccttcctcacaaaagaggactctgctgtgttctacgagctgaag
caagctatcctggaaagcccagtgtcttcctgtccccccgaactagccaaccacccagat
gcccagcataagccaggcaccatcctcaccaagaagcgccgggaagagaccatctttgcc
tga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Disease (1)   
   OMIM (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (11)   
   OC (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (15)   
   RefSeq(nuc) (1)   
   GenBank (7)   
   EMBL (7)   
3D Structure (5)   
   PDB (5)   
Protein domain (4)   
   Pfam (4)   
All databases (75)   

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