KEGG   Herbinix luporum: SD1D_2075
Entry
SD1D_2075         CDS       T04072                                 
Symbol
uvrB
Name
(GenBank) UvrABC system protein B
  KO
K03702  excinuclease ABC subunit B
Organism
hsd  Herbinix luporum
Pathway
hsd03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hsd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    SD1D_2075 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hsd03400]
    SD1D_2075 (uvrB)
DNA repair and recombination proteins [BR:hsd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SD1D_2075 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      SD1D_2075 (uvrB)
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_30 DUF87 AAA_22 FlaG Kinesin GlutR_dimer Microtub_bd AAA_16 AAA_5
Other DBs
NCBI-ProteinID: CUH93611
UniProt: A0A0K8J7H4
Position
I:complement(2249144..2251123)
AA seq 659 aa
MKFKLVSDFAPTGDQPEAISTLVEGFKSGNQCQTLLGVTGSGKTFTMANIIEQIQKPTLI
IAHNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKL
RHSATAALTERNDVIVVSSVSCIYGLGSPIDYQNMVLSLRPGMMKDRDDVLRRLIDIQYT
RNDMDFKRGTFRVRGDVVEIFPASSADMAFRVEFFGDEVDRILEIDVLTGEIKNSLEHMV
VFPASHYVVAPEQLEIAIQNIEGELEERVAYFKREGKLLEAQRISERTNFDIEMLRETGF
CSGVENYSRHLTGLEAGKPPHTLIDYFPEDFLIIIDESHMTIPQIRGMYAGDRSRKQTLV
DYGFRLPSALDNRPLNFEEFESKISQILFVSATPAEYEKQHELLRAEQVIRPTGLLDPEV
SLRPVEGQIDDLLGEIRKEIDKKNKVLITTLTKRMAEDLTNYLREVGIRVKYLHSDIDTL
ERSEIIRDMRMDLFDVLVGINLLREGLDIPEVGLVAILDADKEGFLRSETSLIQTIGRAA
RNAEGRVIMYADKETDSIRKAISETNRRRKIQHEYNIRHGITPTTIKKKVRDLISISKKV
EHNVKDMEKDLESMSKQELNKLVKDITKQMHTAAAELNFELAAELRDKMIEVKKHLMEL
NT seq 1980 nt   +upstreamnt  +downstreamnt
atgaaatttaagctggtttctgattttgcccctacaggggatcaaccggaagccattagt
accttagtagaaggatttaaaagcggtaaccaatgtcagactttactgggtgtaacaggt
tctggtaagacctttacaatggctaatatcatagagcagatccagaagcctaccttaatt
atagcccataataagacacttgcagctcagctgtacggggagtttaaggagtttttccct
gagaatgcagttgagtattttgtcagttactatgattattatcagccggaagcatatgtt
ccttctactgatacctatattgagaaggattccgctatcaatgacgagattgataaattg
cgacattcggcaaccgctgccttgactgagagaaatgatgtcattgtagtatctagtgtg
tcctgtatctatggacttggtagccccattgattatcagaatatggttttgtctttgcgt
cccggtatgatgaaggatagggatgatgtacttagaagattgatagatattcaatataca
aggaatgacatggactttaaaagaggtacttttagggttcgaggagatgttgtggagatt
ttccctgcctcttctgcagatatggcttttcgtgttgaattttttggagatgaagtggat
aggattttggagatagatgtacttacaggtgagataaaaaatagcttggagcatatggtt
gtttttcctgcctcccactatgtggtagcacctgaacaactggagatagccatacagaat
attgagggggagttagaggaaagagtagcttatttcaaaagggaaggtaagcttttagaa
gcccaaagaatttccgaaagaaccaattttgatattgaaatgttaagggagacaggcttt
tgctccggagtagagaattattccagacatttaaccggacttgaggcgggcaagcctccc
cataccctgatagattattttccggaggattttctaattattatagacgagtcccatatg
actattccccagattaggggaatgtatgccggggacagatccaggaagcagaccctggtg
gattatggttttaggttgccttccgctttagataataggcctcttaattttgaggaattt
gaaagtaagattagtcagatactattcgtatcggctactcctgcagaatatgagaagcag
catgaattactaagggcagaacaggttatacgtcctacggggctattagatccggaggtt
tccctgcgtccggtggaaggtcagattgacgatttacttggtgagatacggaaggaaata
gacaagaaaaacaaagtgttgataacaaccttgaccaaaaggatggctgaggatttaact
aattatcttcgtgaagtaggcattcgggttaaatacctgcattcagatattgatacctta
gaacgttctgagattataagggatatgaggatggatttatttgatgtgcttgtgggtata
aatctgcttcgtgaaggtcttgatattcctgaggtgggattggtggctatcttagatgca
gataaggaaggattcttacgttctgaaacctccctaatacagactatcggtagggcggcc
cgtaatgcagaagggcgagttattatgtatgcagataaagaaacggattctattcgtaag
gccataagtgaaaccaaccgccgcagaaagattcaacatgaatataatataagacatgga
attacaccgactaccataaagaagaaggtacgtgacttaatcagcatatctaagaaggta
gaacataatgttaaagatatggagaaagatttagaatccatgtcaaaacaggaacttaac
aaattggttaaagatattactaaacagatgcatacagctgcagcagaacttaactttgag
ctggcagcagagcttcgtgacaagatgatagaagttaagaagcatttaatggagttataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (38)   
   KEGG ORTHOLOGY (1)   
   RefGene (35)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (15)   
   Pfam (15)   
All databases (58)   

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