KEGG   Herbaspirillum seropedicae SmR1: Hsero_0373
Entry
Hsero_0373        CDS       T01268                                 
Symbol
ffh
Name
(GenBank) signal recognition particle subunit SRP54 protein
  KO
K03106  signal recognition particle subunit SRP54 [EC:3.6.5.4]
Organism
hse  Herbaspirillum seropedicae SmR1
Pathway
hse02024  Quorum sensing
hse03060  Protein export
hse03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:hse00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03060 Protein export
    Hsero_0373 (ffh)
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    Hsero_0373 (ffh)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Hsero_0373 (ffh)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:hse02044]
    Hsero_0373 (ffh)
Enzymes [BR:hse01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.5  Acting on GTP to facilitate cellular and subcellular movement
    3.6.5.4  signal-recognition-particle GTPase
     Hsero_0373 (ffh)
Secretion system [BR:hse02044]
 Sec (secretion) system
  Prokaryotic Sec-SRP core components
   Hsero_0373 (ffh)
  Eukaryotic Sec-SRP protein
   Hsero_0373 (ffh)
SSDB
Motif
Pfam: SRP54 SRP_SPB SRP54_N Zeta_toxin CbiA AAA_30 AAA_22 AAA_26 AAA_16 YqeC GTP_EFTU AAA_33 AAA_31 AAA_18 AAA_19 6PF2K DUF5696 APS_kinase AAA_14 Rad17 HTH_Crp_2 KTI12 TsaE AAA_24 ResIII Thymidylate_kin ATP_bind_1 AAA
Other DBs
NCBI-ProteinID: ADJ61898
UniProt: D8IWA0
Position
complement(406226..407596)
AA seq 456 aa
MLDNLTQRLAKVVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKEKAL
GEEVIGSLTPGQALVGVVQRELASLMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTT
VGKLAKYLRETTKKKVLTVSADVYRPAAIGQLETVTGQAGADFFPSQATDKPVDIALAAL
DYAKKHHHEVLIVDTAGRLGIDQAMMDEIRAVHAAIKPIETLFVVDAMLGQDAINTAKAF
SDALPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDPSRMANRILG
MGDILALVEEARKGVDMAAAEGLANKIKGGGKFDLNDFKAQLSQMKKMGGLTSLLDKLPA
QMQAAAGNANMDQAEKQVRRMEGIINSMTPQERAKPELIKATRKRRIAAGAGVQVQEVNR
MLSQFEQMQSMMKKLKGGGMMKMMRNMKGMLPGGMR
NT seq 1371 nt   +upstreamnt  +downstreamnt
atgctagacaacctgacccaacgcctcgccaaagtcgtcaaaaccatgcgcggcgaggcg
cgactgaccgaatcgaatactgccgagatgctgcgcgaagtgcgcctggccctgctggag
gccgacgtggccctgccggccgtgcgcgagttcatcgccaaggtgaaggaaaaagccctg
ggcgaggaagtcatcggctcactcacccccggccaggcgctggtgggcgtggtgcagcgc
gagctggccagcctgatgggcgccgacctgggcccggaagcctcgcagctcaatttcgcc
acccagcccccggccatcatcttgatggccggcctgcaaggcgccggtaaaaccaccacc
gtcggcaagctggccaagtacctgcgcgagaccaccaagaagaaggtgctgaccgtctcg
gccgacgtctaccgcccggccgccatcggccagctggagaccgtgaccggccaggccggc
gccgatttcttccccagccaggcgaccgacaagccggtcgatatcgccctggccgcgctg
gactacgccaagaagcaccaccacgaagtgctgatcgtggacaccgccggccgcctgggc
atcgaccaggccatgatggatgagatccgcgccgtgcatgcggccatcaagcccatcgaa
accctgttcgtggtcgacgccatgctgggccaggacgccatcaacaccgccaaggccttc
agcgacgccctgccgctgaccggcgtagtgctcaccaagctggacggcgactcgcgcggc
ggcgcggcgctgtcggtgcgccacatcaccggcaagcccatcaagttcgccggcgtggct
gaaaagctggatggcctggaagccttcgatccctcgcgcatggccaaccgcatcctcggc
atgggcgacatcctggcgctggtggaagaggcgcgcaagggcgtggacatggccgcagcc
gaaggcctggccaacaagatcaagggcggcggcaagttcgacctcaacgacttcaaggcc
cagttgtcgcagatgaagaagatgggcggcctcaccagcctcttggacaagctgccggcg
cagatgcaggccgccgctggcaacgccaacatggaccaggccgaaaagcaggtgcgccgc
atggaaggcatcatcaattccatgaccccgcaggaacgcgccaagcccgaactgatcaag
gccacccgcaagcgccgcatcgccgccggcgcgggcgtgcaggtgcaggaagtcaaccgc
atgctgtcccagttcgagcagatgcaatcgatgatgaagaagctcaagggcggcggcatg
atgaagatgatgcgcaacatgaagggcatgctgcccggcggcatgcgctag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (28)   
   Pfam (28)   
All databases (48)   

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