KEGG   Herbaspirillum seropedicae SmR1: Hsero_0434
Entry
Hsero_0434        CDS       T01268                                 
Symbol
uvrD
Name
(GenBank) ATP-dependent DNA helicase protein
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
hse  Herbaspirillum seropedicae SmR1
Pathway
hse03420  Nucleotide excision repair
hse03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hse00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Hsero_0434 (uvrD)
   03430 Mismatch repair
    Hsero_0434 (uvrD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hse03400]
    Hsero_0434 (uvrD)
Enzymes [BR:hse01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Hsero_0434 (uvrD)
DNA repair and recombination proteins [BR:hse03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Hsero_0434 (uvrD)
   MMR (mismatch excision repair)
    Other MMR factors
     Hsero_0434 (uvrD)
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 AAA_12 PcrA_UvrD_tudor AAA_30 Viral_helicase1
Other DBs
NCBI-ProteinID: ADJ61959
UniProt: D8IX84
Position
470240..472519
AA seq 759 aa
MQNLLLNLNEEQLAAVTLPAQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPSGILAVTF
TNKAAKEMTARLSGMLPINTRGMWIGTFHGLCNRLLRAHHKDAGLPQTFQILDTQDQLSA
IKRLLKQMNVDDEKYPPRNLMYFINSAKDQGLRAKDVDAYDDYNRKFVELYELYDQQCQR
EGVVDFAELLLRTYELLSRNQPLREHYQSRFRHILVDEFQDTNDLQYKWLKLMAGQHNAV
FAVGDDDQSIYAFRGANVGNMQAFEQEFHVQNLIKLEQNYRSHGHILDTANELIANNSKR
LGKNLRTDAGHGEQVRVYEATSDLQEAQWIIEQVKDLIAEGWARSEIAILYRSNAQSRVL
EHALFSSAIPYRVYGGQRFFERAEIKHAIAYLQLMDNLHNDSAFLRVVNFPTRGIGAKAM
ESLQDAARQYGCSLYAAVPYVAGKAGSSLNAFVKLIEGARFETQHLPLPEMVKVVLDLSG
LMTHYRNEKEGADRIENLEQLVSAATLFVSEEGYGLDAPAFLGPQAQATAGAAITTADGV
EVLDADAPLVTIMSPLSAFLSHASLEAGDNQAQAGQDALQLMTVHSAKGLEFDAVFITGM
EEGLFPHENSAKEEGGVEEERRLMYVAITRARKRLFMTFSQTRMLHGQTRYNMRSRFFDE
MPEQSIKWLSPKIAQHHWFANPKSAWDEVPEAGNNKIAQSFSRQTDSGWRIGQNVSHAKF
GEGVIVNIEGGGGAARAQINFGKFGMKLLDLSVAKLEKI
NT seq 2280 nt   +upstreamnt  +downstreamnt
atgcaaaatcttctcctcaacctcaacgaagagcagctcgccgccgtgacgctgcccgcg
caatcggcgctgatcctggccggcgccggttccggcaagacccgtgtgctgaccacccgc
atcgcctggctgatccagaccgggcaggtctcgccttccggcatcctggcggtgaccttc
accaacaaggccgccaaggaaatgacggcgcgcctgtcgggcatgctgcccatcaatacc
cggggcatgtggatcggcaccttccacgggctgtgcaaccgcctgctgcgcgcgcatcac
aaggacgccggcttgccccagaccttccagatcctggatacgcaagaccagctctcggcc
atcaagcggctgttgaagcagatgaacgtggacgatgagaagtatccgccgcgcaacctg
atgtacttcatcaacagcgccaaggaccagggcctgcgcgccaaggacgtggatgcctac
gacgactacaaccgcaagttcgtcgaactctatgaactctacgaccagcagtgccagcgc
gaaggcgtggtcgatttcgccgagctgctgttgcgcacctatgaattgctctcgcgcaac
cagcccctgcgcgagcactaccagagccgcttccgccacatcctggtcgatgagttccag
gataccaacgacctgcaatacaagtggttgaagctcatggccggccagcacaacgcggtc
ttcgcggtgggcgacgatgaccagagcatctacgccttccgtggcgccaacgtgggcaac
atgcaggccttcgagcaggaattccatgtccagaacctgatcaagctggagcagaactat
cgctcgcatggtcacatcctggacaccgccaacgagctcatcgccaacaacagcaagcgc
ctgggcaagaacctgcgcaccgatgccggccacggcgagcaggtgcgcgtctatgaagcc
accagcgacctgcaggaagcgcagtggatcatcgaacaggtcaaggacctgatcgccgaa
ggctgggcgcgcagcgagatcgccatcctctatcgctccaatgcgcaatcccgtgtgctg
gagcatgcgctgttcagttcggccattccctatcgcgtctatggcggccagcgcttcttc
gagcgcgccgaaatcaagcacgccatcgcctacctgcagttgatggacaacctgcacaat
gattcggccttcctgcgcgtggtcaacttccccacccgcggcatcggcgccaaggccatg
gagtcattgcaggatgcggcgcgccagtatggctgctcgctctatgccgccgtgccgtat
gtggcgggcaaggcgggctcgtcgctgaatgccttcgtcaagctgatcgaaggcgcgcgc
ttcgagacccagcatctgcccctgcccgaaatggtcaaggtggtgctggacctgtccggc
ctgatgacgcactaccgcaacgaaaaggaaggcgccgaccgcatcgagaacctggagcaa
ttggtcagcgctgcgaccctcttcgtctcggaagaaggctatggcctggatgcgccggcc
ttcctcggcccgcaggcgcaggccacggcgggcgccgccatcaccaccgccgatggcgtg
gaagtgctggacgccgatgcgccgctggtgaccatcatgtcgccgctgtcggccttcctc
tcgcatgcctcgctggaagccggtgacaaccaggcgcaggccggccaggacgccctgcag
ctgatgacggtgcactccgccaaggggctggagttcgatgccgtcttcatcaccggcatg
gaagagggcctgttcccgcacgagaacagcgccaaggaagagggcggggtggaagaagag
cgccgcctgatgtatgtggccatcacgcgcgccaggaagcgcctcttcatgaccttctcg
cagactcgcatgctgcacggccagacgcgctacaacatgcgctcacgcttcttcgatgag
atgccggaacaatcgatcaagtggctctcgcccaagatcgcccagcatcactggttcgcc
aatcccaagtcggcctgggatgaagtgccggaggcgggcaacaacaagatcgcccagagc
ttctcgcgccagaccgattcaggctggcgcatcgggcagaacgtgtcgcatgccaagttc
ggcgagggcgtcatcgtcaatatcgaaggcggtggcggcgcggcgcgggcgcagatcaac
tttggcaagttcggcatgaagctgctggatctgtcggtggccaagctggaaaagatctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (37)   

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