KEGG   Herbaspirillum seropedicae SmR1: Hsero_2967
Entry
Hsero_2967        CDS       T01268                                 
Symbol
lpdA
Name
(GenBank) 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase protein
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
hse  Herbaspirillum seropedicae SmR1
Pathway
hse00010  Glycolysis / Gluconeogenesis
hse00020  Citrate cycle (TCA cycle)
hse00260  Glycine, serine and threonine metabolism
hse00280  Valine, leucine and isoleucine degradation
hse00310  Lysine degradation
hse00380  Tryptophan metabolism
hse00620  Pyruvate metabolism
hse00630  Glyoxylate and dicarboxylate metabolism
hse00640  Propanoate metabolism
hse00785  Lipoic acid metabolism
hse01100  Metabolic pathways
hse01110  Biosynthesis of secondary metabolites
hse01120  Microbial metabolism in diverse environments
hse01200  Carbon metabolism
hse01210  2-Oxocarboxylic acid metabolism
hse01240  Biosynthesis of cofactors
Module
hse_M00009  Citrate cycle (TCA cycle, Krebs cycle)
hse_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
hse_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:hse00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    Hsero_2967 (lpdA)
   00020 Citrate cycle (TCA cycle)
    Hsero_2967 (lpdA)
   00620 Pyruvate metabolism
    Hsero_2967 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    Hsero_2967 (lpdA)
   00640 Propanoate metabolism
    Hsero_2967 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    Hsero_2967 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    Hsero_2967 (lpdA)
   00310 Lysine degradation
    Hsero_2967 (lpdA)
   00380 Tryptophan metabolism
    Hsero_2967 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    Hsero_2967 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:hse04147]
    Hsero_2967 (lpdA)
Enzymes [BR:hse01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     Hsero_2967 (lpdA)
Exosome [BR:hse04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   Hsero_2967 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox Pyr_redox_3 AlaDh_PNT_C FAD_oxidored HI0933_like GIDA FAD_binding_2 NAD_binding_8 FAD_binding_3 3HCDH_N DAO 2-Hacid_dh_C Thi4 Lycopene_cycl
Other DBs
NCBI-ProteinID: ADJ64455
UniProt: D8IZW5
Position
complement(3376898..3378325)
AA seq 475 aa
MSKNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNEKGGPAPGGTCTNVGCIPSKAL
LQSSEHYEHASHGFAEHGIEVKGLGLNLEKMLGRKNTVVKQNNDGILYLFKKNKVSFFHG
RGSFVKGDANGYEIKVAGAAEETITAKHVIVATGSNARALPGAEFDEKLILSNTGALSIT
EVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAQKLLTKQGLA
VNLGVKIGAIKAGKNSVSVEYTDAKGDAHTGEFDKLIVSIGRTPNTIGLNAEGVGLKLDE
RGFIAVDGDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNTIPWVI
YTSPEIAWVGKTEQQLKAEGVQYKAGTFPFLANGRARALGDTSGMVKFLADAKTDEILGV
HIVGPMASELISEAVVAMEFRASSEDIARICHAHPSLSEATKEAALAVDKRALNF
NT seq 1428 nt   +upstreamnt  +downstreamnt
atgagcaagaattttgacgtggtcgtcatcggtggcggccctggcggttacatcgccgcc
atccgcgcagcgcaactgggcttcaacaccgcctgcatcgacgaatggaagaacgaaaag
ggcggccccgcaccgggcggcacctgcaccaacgtcggctgcatcccctccaaggcgctg
ctgcaatcctccgaacactatgagcacgccagccacggcttcgccgagcacggcatcgaa
gtcaagggcctgggcctgaacctggaaaagatgctgggccgcaagaataccgtggtcaag
cagaacaacgacggcatcctgtacctgttcaagaagaacaaggtcagcttcttccacggc
cgcggctccttcgtcaagggcgacgccaatggctacgaaatcaaggtcgcgggtgctgcc
gaagaaaccatcaccgccaagcacgtcatcgtcgctaccggctccaacgcccgcgcactg
ccgggcgccgagttcgatgaaaagctgatcctctccaacaccggcgcactgtccatcacc
gaagtgccgaagaagctgggcgtgatcggcgccggcgtgatcggcctggaaatgggttcg
gtctggcgtcgcctgggcgcggaagtgaccgtgctggaggcgctgccgaccttcctgggt
gcagtggacgagcagatcgccaaggaagcccagaagctgctgaccaagcaaggcctggcc
gtgaacctgggtgtgaagatcggcgccatcaaggctggcaagaacagcgtttccgtcgaa
tacaccgatgccaagggcgacgcccacaccggcgaattcgacaagctgatcgtctcgatc
ggccgtacccccaacaccattggcctcaacgccgaaggcgtgggcctgaagctggacgag
cgcggcttcatcgccgtggacggcgactgcaagaccaacctgcccaacgtgtgggcggtc
ggtgacgtggtccgtggtccgatgctggcccacaaggctgaggaagaaggcgttgccgtg
gccgagcgtatcgctggtcagcatggtcacgtcaacttcaacaccattccctgggtcatc
tacacctcgccggaaatcgcctgggtcggcaagaccgagcagcaactgaaggccgaaggc
gtgcagtacaaggccggtaccttcccgttcctggccaacggccgcgcccgtgcgctgggc
gatacctcgggcatggtgaagttcctggccgatgccaagaccgatgagatcctgggcgtg
cacatcgtcggcccgatggcctccgagctgatttccgaagccgtcgtggcgatggaattc
cgtgcttcctccgaagacatcgcccgtatctgccacgctcacccctcgctgtccgaagcg
accaaggaagcggctctggccgtcgacaagcgcgcattgaacttctga

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