KEGG   Herbaspirillum seropedicae SmR1: Hsero_4410
Entry
Hsero_4410        CDS       T01268                                 
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase protein
  KO
K01710  dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
Organism
hse  Herbaspirillum seropedicae SmR1
Pathway
hse00521  Streptomycin biosynthesis
hse00523  Polyketide sugar unit biosynthesis
hse00541  O-Antigen nucleotide sugar biosynthesis
hse01100  Metabolic pathways
hse01110  Biosynthesis of secondary metabolites
hse01250  Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:hse00001]
 09100 Metabolism
  09107 Glycan biosynthesis and metabolism
   00541 O-Antigen nucleotide sugar biosynthesis
    Hsero_4410 (rfbB)
  09109 Metabolism of terpenoids and polyketides
   00523 Polyketide sugar unit biosynthesis
    Hsero_4410 (rfbB)
   01055 Biosynthesis of vancomycin group antibiotics
    Hsero_4410 (rfbB)
  09110 Biosynthesis of other secondary metabolites
   00521 Streptomycin biosynthesis
    Hsero_4410 (rfbB)
   00525 Acarbose and validamycin biosynthesis
    Hsero_4410 (rfbB)
Enzymes [BR:hse01000]
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.1  Hydro-lyases
    4.2.1.46  dTDP-glucose 4,6-dehydratase
     Hsero_4410 (rfbB)
SSDB
Motif
Pfam: GDP_Man_Dehyd Epimerase RmlD_sub_bind Polysacc_synt_2 3Beta_HSD NAD_binding_4 adh_short
Other DBs
NCBI-ProteinID: ADJ65877
UniProt: D8IVR9
Position
5041237..5042253
AA seq 338 aa
MLFVTGGAGFIGANYILHFLAAPHDEAVLNIDKLTYAGNPDNLASVAGDARYLFSQTDIC
DTAAIARLFAQHRPRAVVHCAAESHVDRSIAGPAVFIQTNVNGTFSMLSAAYDYWSTLPA
AEQAAFRFLHISTDEVFGSLAADAPPFTETSPYAPNSPYSASKAASDHLVRAFHSTYGLP
VLITHCSNNYGPFHFPEKLIPLVITNALAGQPLPIYGDGQQVRDWLHVADHCRAIELVLA
RARPGESYNIGGNSEKTNLEVVLTLCDLLDELAPKAQGQYRDQICFVQDRPGHDRRYAVD
TSKIQRELGWSPQHAFRQGLRQTVQWFLAARHASGARP
NT seq 1017 nt   +upstreamnt  +downstreamnt
atgctcttcgtcacaggcggcgccggtttcatcggcgccaactacatcctgcatttcctg
gcggccccgcacgatgaggccgtgctcaacatcgacaagctgacctacgccggcaatccc
gacaacctggccagcgtggccggcgatgcgcgttacctgttcagccagaccgatatctgc
gacaccgcggccattgcccgcctgttcgcgcagcaccgcccgcgcgccgtggtccactgc
gccgccgagagccatgtggaccgctccattgccggcccggcggtgttcatccagaccaat
gtcaacggcaccttcagcatgctcagcgcggcctacgactactggagcacgctgccagcg
gctgagcaggcggccttccgcttcctgcacatctccaccgacgaggtattcggcagcctg
gccgcagacgcgccgcccttcaccgaaacttcgccgtacgcccccaacagcccctactcc
gcctccaaggcggcttccgaccatctggtgcgggcttttcacagcacctatggcttgccg
gtcctcatcacgcattgctccaacaactacgggccgttccacttcccggaaaagctcatc
ccgctggtgatcaccaacgccctggccggccagcctctgcccatctatggcgacggccag
caggtgcgcgactggctgcatgtggccgatcactgccgcgccatcgaactggtcctggcc
cgcgcccgtccgggcgagagttataacatcggcggcaatagcgagaagaccaatctcgag
gtggtcctgaccctgtgcgacctgctcgatgaactcgcccccaaggcgcaaggccagtac
cgcgaccagatctgcttcgtgcaagaccgccccggccatgaccgccgctacgccgtcgac
accagcaagatccagcgcgagctgggctggtcgccgcagcacgccttcaggcaggggctg
cggcagaccgtgcagtggttcctggcggcacgccatgcgtccggagcgaggccatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (7)   
   KEGG PATHWAY (6)   
   KEGG MODULE (1)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (27)   

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