KEGG   Hymenobacter swuensis: Hsw_1805
Entry
Hsw_1805          CDS       T03055                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
hsw  Hymenobacter swuensis
Pathway
hsw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hsw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Hsw_1805
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsw03019]
    Hsw_1805
   03400 DNA repair and recombination proteins [BR:hsw03400]
    Hsw_1805
Enzymes [BR:hsw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Hsw_1805
Messenger RNA biogenesis [BR:hsw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Hsw_1805
DNA repair and recombination proteins [BR:hsw03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Hsw_1805
SSDB
Motif
Pfam: RQC DEAD Helicase_C HRDC HTH_40 RecQ_Zn_bind ResIII HTH_24 MarR_2 HTH_IclR GerE TniB zf-CXXC
Other DBs
NCBI-ProteinID: AHJ97400
UniProt: W8F6N7
Position
2074407..2076656
AA seq 749 aa
MLFAAEPLAPTLESARKVLKQYYGYDSFRPMQEDIISNVLSGQDTVVLMPTGGGKSVCFQ
VPAVVQEGVCVVVSPLIALMKDQVEALKANGISAAYINSSVGQSEQNNIAADCLNGYLKL
LYVSPEKLLSEGFLTFLKRMRVSMFAIDEAHCISSWGHDFRPEYTQLRVLREQFPQVPII
ALTATADRLTQRDIQTQLRLNEPRVFLSSFDRPNLNLIVRPGQDRVGGILEFLERHQGES
GIIYCLSRKQCETLTGKIQAKGIKAGFYHAGMTPNQRAAVQEGFLKDDLQVIVATIAFGM
GIDKSNVRWVIHYNLPKNIEGYYQEIGRAGRDGAPGTAVLFYSFADVMSLRDMLSKDDPN
LTQLNLTKLERMQQFAEAAGCRRKILLNYFGETLPQDCGNCDICRNPPTTFDGTELAQKA
LSAVMRGRERMSISLLIDVLRGMRNQAVLSGGFDQIKTYGAGRDLPYLDWYSYVHQMLND
GLLYIAYEEGYSLKITALGKEVLQGQRNVLMKKFQPAEKAEKTPRGRKAAAAKPVAASPE
AALFEALRTLRKRIADEQGVPPYVIFTDSTLQEMAAERPVSRVAMLGISGVGMKKFENYG
EAFIREVLAHGGNPAALADLDEDTLSINLDPDDPGAPRAPRKKEVSTDAGSTVEATYQLH
RMGLSPEAIAERRNLALSTVHTHLSTLYAKGFDLRIEDFLSPQDLATIQTAQAQLGGEPM
LRDLFDHLREQYDYFRLRLALMYFKRLKG
NT seq 2250 nt   +upstreamnt  +downstreamnt
atgttatttgccgccgaaccactcgctcccacgctcgaatcagcccgtaaagtcctcaag
cagtactacggctacgattccttccggcccatgcaggaagacatcatcagcaatgtgcta
agcgggcaggatacggtggtgctcatgcccacgggcgggggcaaatcggtgtgctttcag
gtgccggcggtggtgcaggagggcgtgtgcgtggtggtgtcgcccctcattgcgttgatg
aaggatcaggtggaagcgctgaaagccaacggcatttcggccgcctacatcaacagcagc
gtgggccagagcgagcagaacaacattgccgccgactgcctcaacggctacctcaagctg
ctctacgtgagccccgagaagctgctgtcggagggctttctcacctttctcaagcgcatg
cgcgtcagcatgttcgccattgacgaggcccactgtatttccagctggggccacgatttc
cgacccgagtacacccagttgcgggtgctgcgcgagcagtttccgcaggtgcccatcatt
gccctcaccgccaccgccgaccgcctcacccagcgcgacatccagacgcagctgcgcctg
aacgagccccgggtgttcctctcgtcgttcgaccggcccaacctgaacctgattgtgcgg
ccggggcaggaccgcgtgggcgggattctggagtttctggagcgccaccagggcgagtcg
ggcattatttactgcctctcgcgcaagcagtgcgaaaccctgaccgggaaaattcaggcc
aagggcatcaaggccggcttctaccacgccggcatgacgcccaaccagcgcgccgccgtg
caggaagggtttctgaaagatgatctgcaggtgattgtggctaccatcgccttcggcatg
ggcatcgacaagagcaacgtgcgctgggtgattcactacaacctgcccaagaacatcgag
ggctactaccaggaaatcgggcgggccggccgcgacggggccccgggcacggccgtgctg
ttctacagcttcgccgacgtgatgagcctgcgcgacatgctctccaaggacgaccccaac
ctcacccagctcaacctcaccaagctggagcgcatgcagcagtttgccgaggccgccggc
tgccgccgcaaaatcctgctcaactacttcggcgaaaccctgccccaggactgcggcaac
tgcgacatctgccgcaacccgcccaccaccttcgacggtaccgagctggcccagaaggcc
ttgtcggccgtgatgcggggccgggagcggatgagcatcagcctgctcattgacgtgctg
cggggcatgcgcaaccaggccgtgctcagcggtggcttcgaccagattaaaacctatggc
gcgggccgcgacctgccctacctagactggtacagctacgtgcaccagatgctcaacgac
ggcctgctctacattgcttacgaggaaggctattcgctaaaaattacagccctgggcaaa
gaagtgctgcagggccagcgcaacgtgctgatgaagaaattccagcccgccgagaaagcc
gaaaaaacgccccggggccgcaaagccgccgcggccaaacccgtggccgcctcgcccgaa
gcggcactgttcgaggccctgcgcaccctgcgcaagcgcatcgccgacgagcagggcgtg
ccgccgtacgtcatcttcaccgactccacgctgcaggaaatggcggccgagcggccggtg
agccgggtggctatgctcggtatttccggggtgggcatgaagaagtttgagaactacggc
gaggccttcatccgggaggtgctggcccacggcggcaaccccgccgccctcgccgacctg
gacgaggataccctgtccatcaacctcgaccccgacgacccaggcgcaccccgggccccg
cgcaaaaaggaggtgagcaccgacgccggcagcaccgtggaagccacctaccagctgcac
cgcatgggtctgagccccgaggccattgccgagcggcgcaacctggccctgagcacggtg
cacacccacctgagcacgctctacgccaagggcttcgacctgcgcattgaggacttcctc
tcgccccaggacctggccaccatccagacggcccaggcccagctgggcggggagcccatg
ctccgcgacctgttcgaccacctgcgcgaacagtacgactacttccgcctgcgcctggcc
ctgatgtacttcaagcggctgaaagggtag

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