KEGG   Haloferax volcanii: HVO_1478
Entry
HVO_1478          CDS       T01200                                 
Symbol
tfb5
Name
(GenBank) transcription initiation factor TFB
  KO
K03124  transcription initiation factor TFIIB
Organism
hvo  Haloferax volcanii
Pathway
hvo03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:hvo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    HVO_1478 (tfb5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hvo03021]
    HVO_1478 (tfb5)
Transcription machinery [BR:hvo03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIB
     HVO_1478 (tfb5)
 Prokaryotic type
  Archaeal type
    TFB
     HVO_1478 (tfb5)
SSDB
Motif
Pfam: TFIIB TF_Zn_Ribbon LysW-like_globular Ribosomal_S27e A2L_zn_ribbon Trm112p OrfB_Zn_ribbon Zn-ribbon_8 Sigma70_r4 YjdM_Zn_Ribbon zf-RRN7 Cyclin_C Lar_restr_allev Zn_Tnp_IS1595 Elf1 Cyclin_N
Other DBs
NCBI-ProteinID: ADE02325
UniProt: D4GYB5
Position
1348391..1349344
AA seq 317 aa
MERPSRQRQREEEATAQEDEQVNCPECGSDQIVTDADQGELVCDDCGLVLDERQIDRGPE
WRAFNHSERQSKSRVGAPITETMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQE
RIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATS
ALYAACRQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLELKPVDPKQFVPRFASAL
DLSEEVQAKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTE
VTIRNRYQEQIEAMGFR
NT seq 954 nt   +upstreamnt  +downstreamnt
atggaacgtccgagccggcagcgtcaacgagaggaggaggcaacggcacaagaggacgag
caggtcaactgtccggagtgcggctctgaccagatcgtcacggacgcagaccagggggag
ctggtgtgtgacgactgcggactcgtcctcgacgagcgacagattgaccgcggtccggag
tggcgggcgttcaaccactccgagcggcagtcgaagtcgcgcgtcggtgcgcccatcacc
gaaacgatgcacgaccgggggctgacgacgaccatcgactggaaggacaaagacgcctac
ggtcgctcgctttcgtccgagaaacgctcgcagatgcaccgcctgcgcaagtggcaagag
cgcatccgaaccaaggacgccggcgagcgcaacctccagttcgccctcagcgaaatcgac
cgcatggcctcggcgctcggcgtcccccggtcggtccgcgaggtcgcctcggtcatctat
cgacgcgcgctcaacgaggatctgattcgcggccgctccatcgagggcgtcgccacctcg
gcgctctacgccgcttgccgtcaggaaggcatcccgcgctcgctcgacgaggtcgcggaa
gtgtcgcgcgtcccgcagaaggaaatcgggcgcacgtaccgctacatctcgcaggaactc
ggcctcgaactcaagcccgtcgaccccaagcagttcgtcccgcggttcgcctccgcgctc
gacctctccgaggaggtccaggcgaaggcgaccgaaatcatcgacgtgtccgccgagcag
ggcctgctgtcggggaagtcgccgaccggcttcgccgccgccgccatctacgccgcgtcg
cttctctgcaacgaaaagaagacccaacgcgaggtcgcggacgtggcgcaggtgacggag
gtcaccatccgcaaccgctaccaagaacagatcgaagcgatgggcttccgctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (16)   
   Pfam (16)   
All databases (31)   

Download RDF
DBGET integrated database retrieval system