KEGG   Haloferax volcanii: HVO_1723
Entry
HVO_1723          CDS       T01200                                 
Symbol
rad25d
Name
(GenBank) DNA repair helicase Rad25
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
hvo  Haloferax volcanii
Pathway
hvo03022  Basal transcription factors
hvo03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hvo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    HVO_1723 (rad25d)
  09124 Replication and repair
   03420 Nucleotide excision repair
    HVO_1723 (rad25d)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hvo03021]
    HVO_1723 (rad25d)
   03400 DNA repair and recombination proteins [BR:hvo03400]
    HVO_1723 (rad25d)
Enzymes [BR:hvo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     HVO_1723 (rad25d)
Transcription machinery [BR:hvo03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     HVO_1723 (rad25d)
DNA repair and recombination proteins [BR:hvo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     HVO_1723 (rad25d)
SSDB
Motif
Pfam: ERCC3_RAD25_C ResIII SNF2-rel_dom Helicase_C DEAD AAA_22 AAA_30 SLFN-g3_helicase MarR_2 Flavi_DEAD TrmB HTH_20
Other DBs
NCBI-ProteinID: ADE02706
UniProt: D4H067
Position
complement(1590526..1592613)
AA seq 695 aa
MTAEDEDQSPPDGDGDIDGAGASRDVLDRLADVTEVSDVPDASTVDADQPSEIADGVSLA
AFYEALESEGRPVVTAQQVARRLGVSQADAMDGLDALAGAGRVQRVNVETDPVVWYPTEW
GDLASRERVVLFPKRREIVVDNPTQYTRARLSQFAHLADTTGDREGRGRGYLYRIRQEDV
WQAPFDDVDSLLSMLRSVLPERSPHLEAWVEDQWKRAHQFRLYSHEEGYTVLEAATESLM
GNVALQKLDDDHVYAPISDTEAWVRDEEIAAIKRILYDAGYPVEDDRDLEEGEELDVTLG
VDLRDYQRDWVDRFVDQRAGVLVGPPGAGKTIAGIGALAAVGGETLILVPSRELARQWRE
ELRSTTDLDADQIGEYHGGAKEIRPVTIATYQTAGMDRHRSLFDSRRWGLIIYDEAHHIP
SRVFQRSADLQSKHRLGLSATPIREDDKEAEIFTLIGPPIGTDWGKLFDAGYVQEPEVEI
RYVGWGDDMARNEWASSDGRERHMLAAMNPGKIFEIRRLRARHADSKTLVFVDYLDQGEA
IAEALDVPFVSGETRHHRREAYFEAFRDGDLDTLVISRIGDEGIDLPNAGLAIVASGLGG
SRRQGSQRAGRTMRPTGSALVYVLATRGTSEEDFAQRQMQHLAGKGIRVRETSADDLDPE
SDGGDTDADTDTEDDESDGAESASADGAESATTDE
NT seq 2088 nt   +upstreamnt  +downstreamnt
atgactgccgaggacgaggaccaaagtcctcccgacggagacggcgacatcgacggggcc
ggcgcgtcccgagacgtgctcgaccgattggccgacgtaaccgaggtatccgacgtgccc
gacgcgtccaccgtcgacgcggaccaaccgagcgaaattgccgacggcgtctcgctcgca
gcgttctacgaagcgctcgaatccgagggccggcccgtggtgaccgcccagcaggtcgct
cgccgcctcggcgtctcgcaggcggacgcgatggacggactcgacgcgctcgccggtgcg
gggcgagtccagcgggtgaacgtcgagaccgacccggtcgtctggtatccgaccgagtgg
ggcgacctcgcctcgcgcgagcgggtcgtcctctttccgaaacgccgcgaaatcgtcgtc
gacaacccgacccagtacacccgggcgcgactctcgcagtttgcgcacctcgcggacacc
accggcgaccgcgagggccgcggccgcggttacctctaccgcattcggcaggaagacgtg
tggcaggcacccttcgacgacgtcgactcgctcctctcgatgcttcggtcggtcctcccc
gagcggtcgccgcacctcgaagcgtgggtcgaagaccagtggaagcgcgcccaccagttc
cgcctctactctcacgaggagggatacaccgtcctcgaagccgccaccgagagcctcatg
ggcaacgtcgcgctccagaaactcgacgacgaccacgtctacgcccccatctccgacacc
gaggcgtgggtcagagacgaagaaatcgcggccataaagcgcatcctctacgacgcgggc
taccccgtcgaggacgaccgcgacctcgaagagggcgaggaactcgacgttacgctcggc
gtcgacctccgcgactaccagcgagactgggtcgaccgattcgtcgaccagcgcgccggc
gtcctcgtcgggccgcccggcgcggggaagaccatcgccggcatcggcgcgctcgccgcg
gtcggtggcgagacgctgattctcgtgccgagtcgcgaactcgcccgccagtggcgcgag
gaactccgctcgacgacggacctcgacgccgaccaaatcggcgagtatcacggcggcgcg
aaagagattcgcccggtcacaatcgccacctaccagaccgccgggatggaccgccatcgc
tcgcttttcgactcgcggcgttgggggctcatcatctacgacgaggcccaccacatcccg
agtcgcgtcttccagcggagcgccgacctccagtccaaacaccgcctcgggctgtcggcg
acgcccatccgcgaggacgacaaggaagcagagatcttcacgctcatcggcccgcctatc
ggcaccgactgggggaagctcttcgacgccggctacgttcaggagcccgaagtcgagatt
cgctacgtgggttggggcgacgacatggccagaaacgaatgggcctccagcgacggccgc
gagcggcacatgctcgccgcgatgaaccccgggaagatattcgagattcgtcggctccgc
gcccgtcacgccgactcgaagacgctcgttttcgtcgactacctcgaccagggagaggcg
attgccgaggcgctcgacgtgccgttcgtcagcggcgagacccgccatcaccgccgcgag
gcgtacttcgaggcgttccgcgacggcgacctcgacacgctcgtcatctcccgcatcggc
gacgagggcatcgacctcccgaacgccggactcgcaatcgtcgcctccggcctcggcggc
tctcgccggcagggctcccagcgcgccggccgaaccatgcgcccgacggggagcgcgctc
gtctacgtgctcgccacccgcggcacgagcgaagaggacttcgcccagcgccagatgcaa
cacctcgccgggaagggtatccgcgtccgggagacgagcgccgacgacctcgaccccgag
tcggacggcggtgacaccgacgccgacactgacaccgaagacgacgagtcggacggtgct
gagtcggcgtctgcggacggcgctgagtcagcgacgaccgacgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (30)   

Download RDF
DBGET integrated database retrieval system