KEGG   Hydrogenophaga sp. PBC: Q5W_02685
Entry
Q5W_02685         CDS       T04491                                 
Name
(GenBank) ribonuclease II
  KO
K01147  exoribonuclease II [EC:3.1.13.1]
Organism
hyb  Hydrogenophaga sp. PBC
Brite
KEGG Orthology (KO) [BR:hyb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:hyb03016]
    Q5W_02685
Enzymes [BR:hyb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Q5W_02685
Transfer RNA biogenesis [BR:hyb03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    Q5W_02685
SSDB
Motif
Pfam: RNB Myosin_N
Other DBs
NCBI-ProteinID: AOS77967
Position
complement(532516..534579)
AA seq 687 aa
MHILFDEAGKFLTGRLLSEAESSLQVELDSGKRVKVKAANALLRFEKPSPAELMKEATAL
AEGMELELAYEFAPEDEFGFADLAREYFNAQAGTAQQAAALLTLQNAPHYFRRAGKGRFK
KAPPEIVAQALAAIEKKKELQARIEAWAAELAAGQCPEPVRQQLYRILFKPDKNGPEYKA
VVEAARQSHTAPLVLLQKAGAITSAYQFHWQRFLFEHFPKGTGFPALSAPPVADELPLAN
VQAFSIDDSATTEIDDALSVQGLGSGTVTLGIHIAAPGLAIAPGSALDEIARHRLSTVYM
PGHKITMLPDAVVEAYTLQAGRDCPAVSLYVEIDEATLAVGASRTALERVPIAHNLRHDR
LDAIVTEAWLGGEANSAAPAELAGLQPALVFLHRFAREHKAQREVARGKPETFTRPDYTF
KLEGVQGDEPAGDERVLIGTRSRGAPLDLMVAEAMILANKTWGLWLAECGVPGIYRSQAS
LLPGIKVRMGTKALPHAGIGVKAYAWSTSPLRRYVDLVNQWQIVACARHGKTAALAAPFK
PKDANLFAVVSAFDAAHAAYNGFQGGMERYWTLQHLRQNGITELTATLIKDGLVRADTLP
LVLPVLGAEGLMRGAHLRVRLGAIDDISLEVSGTVIERLDQPVESADALESEAEEDEEEP
LGAPVALAIDLDEPAAADTPGDTPQNG
NT seq 2064 nt   +upstreamnt  +downstreamnt
atgcacatcctgttcgacgaggccggcaagttcctgaccggccgcctgctgtccgaggcc
gaaagttctcttcaagtggaactcgactccggcaagcgggtgaaagtgaaggcggccaac
gcgctgctgcgattcgagaaaccctcgcccgccgagctcatgaaggaggccactgcgctg
gccgagggcatggagctcgagctcgcctacgagttcgcgcccgaggacgagttcggcttc
gccgacctggcgcgcgagtacttcaacgcccaggccggcacggcacagcaggcggccgcc
ctgctcaccctgcagaacgcgccgcactacttccgccgcgccggcaagggccgcttcaag
aaggcgccgcccgagatcgtggcgcaggccctggccgccatcgagaagaagaaggagctg
caggcccgtatcgaagcctgggccgccgagctcgccgccggccaatgccccgagccggtg
cgccagcagctctaccgcatcctcttcaagcccgacaagaacggccccgagtacaaggcc
gtggtggaggccgcgcgccagagccacaccgcaccgctggtgctgctgcagaaggccggc
gccatcaccagcgcgtatcagttccactggcagcgcttcctgttcgagcacttccccaag
ggcacgggctttcctgcgctcagcgcgccgccggtggccgacgagctgcccctggcgaac
gtgcaggccttctccatcgacgactccgccaccaccgagatcgacgacgcgctgtccgtg
cagggtctgggttcgggcacggtcacgctgggcatccacatcgcggcgccgggcctggcc
atcgcgcccggcagcgcgctcgacgagatcgcccgccaccggctgtccaccgtctacatg
ccgggccacaagatcaccatgctgcccgatgcggtggtggaggcctacacgctgcaggcc
gggcgcgactgcccggccgtgtcgctgtacgtggagatcgacgaggccacgctggccgtg
ggcgccagccgcaccgcgctggagcgcgtgcccatcgcccacaacctgcgccacgaccgg
ctcgacgccatcgtcaccgaggcatggctcgggggcgaagcgaattccgccgctccagcg
gaactcgcgggcctgcagcccgcgctggtcttcctgcaccgcttcgcgcgcgaacacaag
gcgcagcgagaagtggcgcgtggcaagcccgagacctttacgcggcccgactacaccttc
aagctcgagggcgtgcaaggtgacgagcccgccggcgacgagcgtgtgctcatcggcacg
cgctcgcgcggcgcgccgctggatctgatggtggccgaggccatgatcctggccaacaag
acctggggcctgtggctggccgagtgcggcgtgcccggcatctaccgcagccaggccagc
ctgctgcccggcatcaaggtgcgcatgggcaccaaggcgctgccgcacgcgggcatcggg
gtgaaagcctacgcctggagcacctcgcccttgcgccgctacgtcgatctggtgaaccag
tggcagatcgtggcctgcgcgcgccacggcaagacggccgcgctcgccgcgcccttcaag
cccaaggacgccaacctgttcgccgtggtgagcgccttcgacgccgcccacgccgcgtac
aacggtttccagggcggcatggagcgctactggacgctgcagcacctgcgccagaacggc
atcaccgaactcacggccacgctgatcaaggacggcctggtgcgcgccgacaccctgccc
ctggtgctgcccgtgctgggcgccgagggcctgatgcgcggcgcccacctgcgcgtgcgg
ctcggcgccatcgacgacatcagcctggaggtaagcggcaccgtcatcgagcggctcgac
cagccggtggagagcgccgacgcgctggagagcgaagccgaagaggacgaggaagagccg
ttgggcgccccggtggcgctggccatcgatctggacgagcctgccgctgccgatacccct
ggggacaccccgcagaacggataa

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