KEGG   Hydrogenophaga crassostreae: LPB072_16880
Entry
LPB072_16880      CDS       T04505                                 
Name
(GenBank) ribonuclease E/G
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
hyl  Hydrogenophaga crassostreae
Pathway
hyl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hyl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LPB072_16880
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hyl03019]
    LPB072_16880
   03009 Ribosome biogenesis [BR:hyl03009]
    LPB072_16880
Enzymes [BR:hyl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     LPB072_16880
Messenger RNA biogenesis [BR:hyl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LPB072_16880
Ribosome biogenesis [BR:hyl03009]
 Prokaryotic type
  rRNA processing factors
   LPB072_16880
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 dnstrm_HI1420 Anti-TRAP
Other DBs
NCBI-ProteinID: AOW14265
UniProt: A0A162Z4R1
Position
3674854..3677835
AA seq 993 aa
MKRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRQYFQGSVAPSQARINDVIKEGQELLVQVEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGEDRQELKAALDQLEYPNGMSIIARTAGIGRDAAELQ
WDLNYLLKLWTAIDGAALGGKGAFLIYQESSLVIRAIRDYFNSDIGEILIDTDDIFEQAH
QFMAHVMPEHEHRVKRYRDDAPLFSRFQIEHQIETAFSRTVNLPSGGAIVIDQTEALVAV
DVNSARAIKGGDIEETATRTNLEAADEVARQARLRDLGGLIVIDFIDMDESKNRREVENR
LRDALRQDRARVQFGSISKFGLLEMSRQRLKPTLSEGSSIPCPRCGGSGHIRDTESSALQ
ILRVIQEESLKDSTAAVLVQVPVEVASFLLNEKRTEITKIELKQRINVLLVPNKSLDTPN
YKLERLKHDDPRLDNLDSSYKLADEPEDATSFTRRSQERTNKQEPLIKGVLPDGPAPVAL
PKADKVDAVAKVAAAAVAPIAKAPAVLAEKGFFGWLKTLFGVAELTAPAPVQPTKDTVKE
EPKEARGEQRRDGRGGRGGRNSEGRGSRDGGRNARGGEGRSERNSDRNGARVDGRNAENR
GEPRPVEGRGESAQGDRRSGGRGEGRNGGRRDNRREMPQADEANNNASAQVIGNEAGNDA
ADNGENQRRERRPRNDNRRRPQATDEAGNAPAQQLVSDDSVQTAPGPEGDTSNSETGEQR
APRERRSRDRYGRDRRERGPRDAQAQAGDDTIADSTVPTAEATPANVGETPQEEAPVRSS
YFSLPVETAPTAVAAIAAVDVAPEQVAEVVEPVRAPQADVVAAPAEAPKPRPQPSMAASA
VEETTKGLPKVAAYVLPMDAMSEVARASGLEWVNSDVERVALAQAAIAAEPKPIHVPREI
KPVELVDEGPLVLVETRKDLNKVTLPFEGTSAT
NT seq 2982 nt   +upstreamnt  +downstreamnt
atgaaacggatgttgatcaatgccacgcaggctgaagaacgccgcctggccatcgtcgac
gggcaaaaactgctcgactacgaaatcgaaatcgaaggacgcgaacagcgcaaaggcaat
atctacaaggccgtggtcacccgcgtcgagccttcgctggaagcctgcttcgtggattac
ggcgaagaccgccacggctttttgccgttcaaggaaatctcgcgtcagtatttccagggc
agcgttgcaccgtcccaagcccgcatcaacgatgtgatcaaggaaggccaggaactgctg
gtccaagttgagaaagaagagcgcggcaacaaaggcgctgccctgactaccttcgtcagc
ctggctggccgctatgtggttctgatgcccaacaacccacgtggtggtggcgtttcgcgc
cggatcgaaggcgaagaccgccaggaactgaaggccgctctcgaccagctcgaatacccc
aacggcatgagcatcatcgcgcgcaccgccggcattggccgcgacgccgccgaactgcag
tgggacttgaactacctgctgaagctctggaccgctattgatggtgccgccctaggcggc
aaaggcgctttcctgatctaccaggagtcgagtctggtgattcgcgccatccgcgattac
ttcaacagcgacatcggcgagattctgatcgacaccgacgacatcttcgaacaagcgcac
cagttcatggcgcacgtcatgcccgagcacgaacaccgtgtgaagcgctaccgcgatgac
gcgccgctgttcagccgcttccagatcgaacaccagatcgaaaccgcgttcagccgcacg
gtcaacctgccctcgggcggcgccatcgtgatcgaccagaccgaagcactggtggccgtg
gacgtgaactctgcgcgcgccatcaagggcggcgacatcgaagagaccgctacccgcacc
aacctggaagccgccgacgaagtggcccgccaggcccgtttgcgcgacttgggtggcctg
atcgtgatcgacttcatcgacatggatgagtcgaaaaaccgccgcgaagtggaaaaccgc
ctgcgcgacgcgttgcgccaggaccgcgcccgcgtccagtttggctccatcagcaagttt
ggcctgctcgaaatgagccgccagcgcctgaagcccacgctcagcgaaggttcgtcgatt
ccctgcccgcgatgcggtggctctggccacatccgcgacaccgaatcttcggcgctgcag
atcttgcgcgtgatccaggaggagtcgctcaaagacagcacggcagcggtgctcgtgcag
gtgccggtcgaagtggccagcttcctgctcaacgagaagcgcaccgagatcaccaagatc
gaactcaaacagcgcatcaacgtgctgctcgtacccaacaaatcgctggacacgcccaac
tacaagctcgaacgtctcaaacacgacgacccccgcctggacaacctggactccagttac
aagctggccgacgagcctgaggacgccacaagcttcacacgccgcagtcaggagcgcacc
aacaagcaggagcccttgatcaagggtgtcttgcctgatggccctgcgcccgtggcactt
cccaaagcggacaaagtggacgcggtggccaaagtggcagcggctgccgtggcgcctatc
gccaaagcgcctgccgtgctggcagaaaaaggtttctttgggtggctcaaaacgctgttt
ggcgttgccgagctgaccgctcccgcaccggtgcaaccgaccaaggacacggtaaaagag
gaacccaaggaggcgcgtggcgaacaacgccgcgatggccgaggtggtcgtggtggccgg
aacagcgaaggtcgcgggtcacgcgacggcggccgcaacgcacgcggcggtgaaggtcgc
agtgagcgcaacagtgatcgaaatggtgcccgggttgatggtcgcaatgccgaaaaccgc
ggcgaaccgcgtccagtcgaaggccggggtgaaagcgctcaaggcgaccgccgctcgggt
ggtcgaggtgaaggccgcaacggcggtcgccgcgacaaccgccgcgaaatgccacaggct
gacgaggcgaacaacaacgcgtctgctcaggtcatcggcaacgaggctggcaatgacgct
gcggacaatggtgagaaccaacgccgtgagcgccgtccacgcaacgacaatcgccgccgc
ccgcaagccactgacgaggccggcaatgctccggcgcaacaactggtgagcgatgattcc
gttcaaacggctcccggcccagaaggtgacaccagcaacagcgagacaggcgagcaacgc
gccccacgcgagcgccgcagccgtgaccgctatggtcgtgaccgccgcgagcgaggccca
cgcgatgcgcaggctcaagccggcgacgacaccatagccgactcgaccgtgccgacagcg
gaagcaacaccagccaacgttggtgaaacaccgcaagaagaagcgccagttcgcagcagc
tacttctccctgccggtggaaacagcacctaccgctgtcgcagcgatcgcggctgtagat
gttgccccggaacaagtggctgaagtggtcgaacccgtgcgtgcgccacaagctgatgtg
gttgcagcgccggctgaagcacccaaaccgcggccacagccgtcaatggctgcttcggct
gtggaggaaaccaccaagggtttgcccaaggtcgccgcatacgtgctgccgatggacgca
atgagcgaagtggctcgggccagcggactggaatgggtgaactcggatgttgaacgcgtc
gcactggctcaagcggctatcgctgccgaacccaagccgatacacgtgccacgggaaatc
aaacctgtggaactggtcgacgaaggcccactggttctggtcgagacccgcaaagatctg
aacaaagtcaccttgcctttcgaaggcacatcagccacataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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