KEGG   Intrasporangium calvum: Intca_1353
Entry
Intca_1353        CDS       T01385                                 
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
ica  Intrasporangium calvum
Pathway
ica03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ica00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Intca_1353
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ica03019]
    Intca_1353
   03400 DNA repair and recombination proteins [BR:ica03400]
    Intca_1353
Enzymes [BR:ica01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Intca_1353
Messenger RNA biogenesis [BR:ica03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Intca_1353
DNA repair and recombination proteins [BR:ica03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Intca_1353
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_30 RecQ_Zn_bind Phage_Coat_B
Other DBs
NCBI-ProteinID: ADU47869
UniProt: E6S6X4
Position
complement(1513769..1515955)
AA seq 728 aa
MPSSPAALAALDLRERATVALRRLVGRDDADFRDGQLEAIEALVTGHRRVLVVQRTGWGK
SAVYFVATALRRAEGAGPTVIVSPLLALMRDQIGAAERAGIRAVTLNSTNADEWAAVSGA
LARGEVDVLLVSPERMNNPRFREEQLPGLAQTCGLLVVDEAHCISDWGHDFRPDYRRIRD
LLTTLPEETPVLATTATANARVVTDVVEQLGAGGRDVLTLRGPLARASLRLGVLPLSAPE
QRLAWLIAHLGDLPGSGIVYALTVSAAEDVAAALREAGYEVAAYTGRTEPGERIRLEQDL
RDNRLKALVATSALGMGFDKPDLGFVLHLGAPSSPVAYYQQVGRAGRATERADVLLMPGP
EDKDIWRYFASASMPRQDQADAVLRALAQTGRPLSTVALESIVDVRRTRLELLLKVLDVD
GAVQRVQGGWVATGEPWIYDSERYQRVSDARQREQQLMVDYERSDGCRMAFLQQCLDDDT
AQECGRCDRCAGTWFPDAIPEAAVLTARSRLERPGVALEPRVQWPPGMDRLGVPVKGRIA
PSVALSEGRAVARLTDLGWGQRLRELLRSTTPQPGSTSPEASSAEPAASDRPVPPEVLRA
VVDVLRAWDWAERPVAIVAVPSRHRPQLVTSLATGLGELGRLPYLGALDLVEGGPVGEPG
GNSAFRLANIWGRFTVGAELHQRLQGVPGPVLLVDDVADSRWTLTVAGALLREAGAPAVL
PLTLAVEA
NT seq 2187 nt   +upstreamnt  +downstreamnt
atgccgagctcacccgccgccctcgccgccctcgacctgcgcgagcgcgcaaccgtcgcg
ctgcggcggctcgtcggacgggacgacgccgacttccgcgacggccagctcgaggccatc
gaggcgctggtgaccgggcaccgcagggtcctcgtcgtccagcgcaccgggtggggcaag
tcggcggtctacttcgtcgcgaccgccctgcgccgggccgagggagccggtccgaccgtc
atcgtctcccccctgctcgcactcatgagggaccagatcggcgcggccgagcgcgcgggt
attcgcgccgtgacgctcaactcgacgaacgctgacgagtgggcggccgtgtccggcgcc
ctggcccggggtgaggtggacgtgctgctcgtcagcccggagcgcatgaacaacccgcgg
ttccgcgaggagcagctgcctgggctggcccagacgtgcgggctgctcgtcgtcgacgag
gcacactgcatcagcgactggggccacgacttccgccccgactaccgccggatccgggac
ctgctcacgacgctgccggaggagactcccgtgctggcgacgactgccacggccaatgcg
cgggtcgtgaccgacgtcgtcgagcagctgggcgccggaggccgagacgtcctcacgctg
cgcggtccgctggcccgggcctccttgcgactgggcgtgctgccgctgtccgcccccgag
caacgtctggcctggctcatcgcacacctgggcgacctgcccggctcgggcatcgtctac
gccctgaccgtctcggcggccgaggatgtcgcggctgcgcttcgtgaggccggctacgag
gttgccgcctacaccgggcgcaccgagcccggtgagcggatccgcctggagcaggacctg
cgagacaaccggctcaaggcgctcgtcgcgacctcggcgctcggcatgggcttcgacaag
ccggacctgggcttcgtgctccacctcggcgcaccttcctcgccggtcgcgtactaccaa
caggtcggtcgcgcgggtcgcgccaccgagcgggccgatgtcctgctcatgccgggcccg
gaggacaaggacatctggcgctacttcgcctcggcgtcgatgccgcggcaggaccaggcg
gacgcggtgctgagggcgctcgcccagactgggcgcccgctgtcgaccgtcgcgctcgag
tcgatcgtcgacgtgcgccggacccgactggagctgctcctcaaggtccttgacgtcgac
ggcgcggtgcagcgcgtccaagggggctgggtcgcgaccggcgagccgtggatctacgac
tcggagcgctaccagcgcgtctcggacgcccgtcagcgtgagcagcagctcatggtcgac
tacgagcggtccgacggctgccggatggccttcctgcagcagtgcctggacgacgacacg
gcccaggagtgcggtcgctgcgaccggtgtgccgggacgtggttccccgacgcgattccc
gaggccgccgtgctcacggcgcgctcccgcctcgagcgtcccggggtcgccctcgagcca
cgggtccagtggccgcccggcatggaccggctcggcgtgccggtcaaggggcggatcgcg
cccagcgtggccttgtcggagggccgcgccgtggcccgcctcaccgacctcggctggggg
cagcggctgcgcgaactgctccgctcgaccacccctcagccggggtcgacgagcccggag
gcgagcagcgcggagccggcagcgtcggaccgcccggtcccgccggaggtgctccgggcc
gtggtggacgtgctccgggcctgggactgggctgagcgccccgttgcgatcgtggcggtg
ccgtcgcggcaccgaccgcagctcgtgacgtctcttgccaccggcctcggcgagctcggc
aggctgccctacctgggcgccctcgacctggtcgagggaggcccggtcggcgagccgggg
ggcaacagtgccttccgcctggcgaacatctggggccgcttcaccgtcggggcagagctg
caccagcgtctccaaggcgttcccggcccagtcctgctcgtcgacgacgtcgcggactcg
aggtggaccctcacggtggccggcgcgctgctgcgtgaggcgggcgcgcccgccgttctc
ccgctcaccctcgccgtggaggcctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (25)   

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