KEGG   Idiomarina sp. X4: CWC33_03960
Entry
CWC33_03960       CDS       T05226                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
idi  Idiomarina sp. X4
Pathway
idi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:idi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CWC33_03960 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:idi03021]
    CWC33_03960 (rpoC)
   03400 DNA repair and recombination proteins [BR:idi03400]
    CWC33_03960 (rpoC)
Enzymes [BR:idi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CWC33_03960 (rpoC)
Transcription machinery [BR:idi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CWC33_03960 (rpoC)
DNA repair and recombination proteins [BR:idi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CWC33_03960 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Biotin_lipoyl_2 Peptidase_M23 Apocytochr_F_C DUF2267
Other DBs
NCBI-ProteinID: ATZ72901
Position
complement(828985..833220)
AA seq 1411 aa
MKDLLKLLKPTNQADEFDGIRIALSSPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVTEGGLTSLEQGQILTEEEYLDALEEHGDEFDAKM
GAEAVLDLLRAVDIDAEIQTLREELPETNSETKRKKISKRLKLLEAFQMSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPK
LRLHQCGLPKKMALELFKPFIYGKLERRGLATTIKAAKKMVERETAEVWDVLDEVIKEHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHLPLTLEAQLEA
RALMMSTNNVLSPASGDPIIVPSQDVVLGLYYMTKEKINGKGEGMIFKSPSEAEKAYRNG
DVELHSRVKVRITDTTADEDGNRTTKTAVRDTTVGRALLSLIMPEGLPFELIDQAMGKKP
IARMLNQAYRNLGLKDTVIFADQIMYTGFHYAMVSGASVGINDMVIPEAKKEIVAAAEEE
VAEIQEQFESGLVTAGEKYNKVIDIWSTANEKVSKAMMDNLSKEVVTNKDGKEEEQASFN
SIFMMADSGARGSPAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVSQDVVIMEEDCGTHDGLTMKPLIEGGDVVEPLRERVL
GRVLCDDVLKPGSEDVLLPRNTLLDEKNCDILEENSIDEVKVRSVITCDTDFGVCAHCYG
RDLARGHMVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRATAENSVQVKNSGTIKL
HNAKWVVNSDKEHVITSRSTELTLIDEYGRERERYKVPYGAVLKKGEGDAVEGGETVANW
DPHTHPIITEVEGRIKFVDLIDGVTMTRQTDELTGLSSIVVLETGQRTSAGKDMRPMVKL
VDGKGNDVNIVGTDIPAQYFLPGNAIINLEDNAEVKVGDTLARIPQEGSKTRDITGGLPR
VADLFEARRPKEPAILAEKTGTVSFGKETKGKRRLIITPNDGGDQHEEMIPKWRQLNVFE
GEQVEKGEVIADGPEAPHDILRLRGVSAVANYIVNEVQEVYRLQGVKINDKHIETIVRQM
LRKALILRANDTNLLEGEMVEMAEVLAANAKAEAEGKTPATFERQLLGITKASLSTESFI
SAASFQETTRVLTEAAVGGRKDSLRGLKENVIVGRLIPAGTGYSYHKERMQRRVEELDVE
EAPTMTAEQAEQQLADALNAGNESPKDDSAE
NT seq 4236 nt   +upstreamnt  +downstreamnt
gtgaaagacttgttgaagcttttaaagccgacgaatcaagcagacgaatttgacggaatt
cgtattgctttgtcttcgccagatatgatccgtagttggtcgtatggtgaagtcaaaaag
ccagaaactattaactatcgtacgttcaaaccagagcgtgacgggttattctgtgctcgt
atttttggtccagtaaaagactacgaatgtttgtgtggtaagtacaagcgtttgaagcac
cgcggtgttatttgtgagaagtgtggcgttgaagtcaccttaaccaaagtgcgtcgtgag
cggatgggtcacattgagctagcaagcccagtggcacatatctggttcttgaaatcactg
ccatctcgtattggcctaatgctggatatgaccttgcgtgatattgagcgggtgctttac
tttgaatcttacgttgttacagagggcggtttaacgtctttagaacaaggtcagattctt
actgaagaagaatacctggacgcattggaagagcacggcgacgagttcgatgcgaaaatg
ggtgccgaagcggtacttgatttactgcgagctgtcgacattgacgctgaaatccaaacc
ttgcgcgaagagttgccagaaaccaactctgaaaccaagcgtaagaaaatcagcaaacgt
ctaaaactgttagaagccttccaaatgtctggcaacaagccagagtggatgattctgaaa
gtactgcctgttctgccgccagacttacgtccgttagtaccgttggatggtggtcgtttt
gctacgtctgatttgaacgacttgtaccgccgcgttattaaccgtaataaccgtttgaag
cgcctattagacctggctgctccggatattattgtacgcaacgaaaaacgtatgcttcag
gaagcggttgatgccttattagataacggccgtcgtggtcgtgctattactggctccaac
aaacgccctctgaagtctttggctgacatgatcaaaggtaaacagggtcgcttccgtcag
aacctgctgggtaaacgtgttgactattcaggccgttcggttattaccgttggtcctaaa
cttcgcttacaccagtgtggtcttcctaagaagatggctctggagctgttcaagccgttt
atctatggtaaattagagcgccgtggtttagctacaaccattaaagctgctaagaaaatg
gttgagcgcgaaaccgctgaagtttgggatgttctggatgaagtgatcaaggagcatccg
gtattgcttaaccgtgcaccaacacttcaccgtttaggtattcaggcgtttgagccggta
ctgattgaaggtaaagcgattcagttacatccattggtctgtgcggcatataacgccgac
tttgacggtgaccaaatggctgttcacttgccgctgaccttagaagctcagctagaagcg
cgtgcgttgatgatgtcaaccaacaacgtgctgtcacctgcaagtggtgacccaatcatc
gtgccttctcaggacgttgtactgggtctttattacatgaccaaagagaagatcaacggt
aaaggcgaaggcatgatcttcaaaagcccgtctgaagctgagaaagcgtaccgtaatggt
gatgtagagctgcattcacgcgtaaaagtgcgtattacggacacaaccgctgatgaagat
ggtaaccgtacgactaaaacagccgtgcgtgataccaccgtaggtcgtgcattgttgtcg
ctaattatgccagaaggtttgccgtttgagcttatcgatcaggctatgggtaaaaagcca
atcgcacgtatgctgaaccaggcgtatcgtaacctgggtctgaaagacacagttattttt
gctgaccaaatcatgtacaccggtttccattatgcgatggtttcaggcgcatcggttggt
atcaacgatatggttattcctgaagcgaagaaagaaattgtcgctgcagcggaagaagaa
gtagctgaaattcaggaacagtttgagtctggcttggtaaccgctggtgagaaatacaac
aaagttatcgatatttggtctacagctaacgagaaagtctcgaaagcgatgatggataac
ttgtcgaaagaagttgtcaccaataaagacggtaaagaagaagagcaagcatcgtttaac
tctatcttcatgatggctgattcaggcgctcgtggtagccccgcgcagattcgtcagttg
gccggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaacgcctatcgtt
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctcgacgcacggtgctcgt
aaaggtcttgccgataccgcattgaaaacagcgaactcaggttatctgactcgtcgtctg
gtcgatgtttctcaggacgtcgttatcatggaagaagactgtggtacacacgacggtctg
acaatgaagccattgattgaaggtggtgatgttgtagagccattgcgtgagcgtgtttta
ggtcgtgttctatgtgacgacgttcttaagccaggtagcgaagacgtgctgttaccgcgt
aatacgctgcttgacgagaagaattgcgacattctcgaagaaaactctatcgatgaagtt
aaagttcgctcggttatcacctgtgacacggactttggtgtttgtgcgcactgttacggt
cgtgacttggctcgtggccatatggttaaccaaggtgaagcggttggtgttatcgcagca
cagtcaattggtgagccgggtacacagctcaccatgcgtaccttccacattggtggtgcg
gcgtcgcgtgcaacggctgagaacagcgtacaggttaaaaactcaggtactatcaaactg
cacaacgctaaatgggttgtaaacagcgataaagagcatgtaattacttctcgctctact
gagttgacgcttattgacgaatacggtcgcgagcgcgagcgttataaagtgccttacggt
gcggtcttgaagaaaggtgaaggcgacgcagttgaaggcggcgaaaccgttgctaactgg
gatccgcatacgcacccaatcattaccgaggtggaaggtcgtatcaagtttgtcgactta
attgacggcgttactatgacgcgtcaaaccgacgagctaaccggtctttcaagcatcgtt
gtgctggaaacaggtcagcgtaccagtgccggtaaagatatgcgtccaatggtcaagctg
gttgatggtaaaggtaacgatgttaacatcgtcggtaccgatatccctgcgcaatacttc
ttgccgggtaacgcaatcattaaccttgaagataacgccgaagtaaaagtcggtgatacc
ttggcgcgtattccgcaggaaggctcgaaaactcgagacattaccggtggtctgccgcgt
gttgctgacttgttcgaagcacgtcgcccgaaagaacctgcgattcttgcagagaagacg
ggtacggtctcgttcggtaaggaaacgaaaggtaagcgtcgcttaatcatcacacctaac
gacggtggtgatcagcatgaagaaatgattccgaaatggcgtcagcttaacgtgttcgaa
ggtgagcaggttgagaaaggtgaggttattgctgatggtccagaggcaccacacgatatc
ctgcgtctgcgtggcgtaagcgctgtagcgaactacatcgtgaacgaagttcaagaagtt
tatcgcttacagggtgttaaaattaacgataagcacattgaaacgattgttcgtcagatg
ctgcgtaaagcgttaattctgcgcgcaaacgataccaacttgctagaaggcgaaatggtt
gaaatggcggaagtcttggcagcgaacgcaaaagcggaagcggaaggcaaaacgccggca
accttcgaacgtcagctgttgggtattaccaaagcgtcactgtcgacagaatcgttcatc
tctgctgcatcgttccaggaaacaactcgtgtcctgaccgaagcggccgttggtggacgc
aaagacagcctgcgtggcttgaaagaaaacgttattgtgggtcgattaattccggctggt
accggttactcgtatcacaaagagcgtatgcaacgtcgcgtagaagaattggacgttgaa
gaagctccgacaatgactgcagagcaagctgaacaacagttagcggacgctcttaacgca
ggaaatgaatcgccaaaagacgattctgccgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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