KEGG   Idiomarina sp. OT37-5b: C5610_01285
Entry
C5610_01285       CDS       T05379                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
idt  Idiomarina sp. OT37-5b
Pathway
idt03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:idt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    C5610_01285 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:idt03021]
    C5610_01285 (rpoC)
   03400 DNA repair and recombination proteins [BR:idt03400]
    C5610_01285 (rpoC)
Enzymes [BR:idt01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     C5610_01285 (rpoC)
Transcription machinery [BR:idt03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     C5610_01285 (rpoC)
DNA repair and recombination proteins [BR:idt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      C5610_01285 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Biotin_lipoyl_2 Peptidase_M23 DUF2267 Apocytochr_F_C LPD39
Other DBs
NCBI-ProteinID: AVJ55047
UniProt: A0A2S0IHT0
Position
261608..265840
AA seq 1410 aa
MKDLLKFLKPANQTEEFDGIRIQLSSPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVTEGGLTSLEQGQILTEEEYLDALEEHGDEFDAKM
GAEAVLDLLRAIDIDAEIQQLREELPETNSETKRKKISKRLKLLESFQMSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPK
LRLHQCGLPKKMALELFKPFIYGKLERRGLATTIKAAKKMVERETAEVWDVLDEVIKEHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHLPLTLEAQLEA
RALMMSTNNVLSPASGDPIIVPSQDVVLGLYYMTKEKINAKGEGMAFKSPSEAEKAYRNG
LVELHSRVKVRITDTTIHEDGTKETKTQLRDTTVGRALLSLIMPKGLPFELIDQPMGKKP
IARMLNQAYRDLGLKDTVIFADQVMYTGFHYAMVSGASVGINDMVIPDAKKEIVEAAEEE
VAEIQEQFESGLVTAGEKYNKVIDIWSTANEKVSKAMMDNLSKEIVINKDGKEEEQASFN
SIFMMADSGARGSPAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVSQDVVIMEEDCGTFEGLIMKPLIEGGDVVEPLRERVL
GRVVCEDVLKPGSDEVLLPRNTLLDEKNCDILEENSIDEVKVRSVITCDTDFGVCAHCYG
RDLARGHMVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRATAENSVQVKNPGTIKL
HNAKWVVNSDKAHVITSRSTELTLIDEYGRERERYKVPYGAVLKKGEGDAVEGGETVANW
DPHTHPIITEVEGRIKFVDLIDGVTMTRQTDELTGLSSVVVLETGQRTSAGKDMRPMVKL
VDEKGNDVNIVGTDIPAQYFLPGNAIINLEDNAEVKVGDTLARIPQEGSKTRDITGGLPR
VADLFEARRPKEPAILAEITGTVSFGKETKGKRRLLITPTDGGDQYEEMIPKWRQLNVFE
GEHVEKGEVIADGPEAPHDILRLRGVSAVANYIVNEVQEVYRLQGVKINDKHIETIVRQM
LRKALILRANDTNLLEGEMVEMSEVLAANAKAEAEGKQPATFERQLLGITKASLSTESFI
SAASFQETTRVLTEAAVGGKKDSLRGLKENVIVGRLIPAGTGYSYHKERMQRRLDEMQVV
EEAPKMTAEEAEQQLADALNAGGQSDDSAE
NT seq 4233 nt   +upstreamnt  +downstreamnt
gtgaaagacttgcttaagtttttaaaaccggctaaccagacagaagagttcgatggtatt
cgaatccaactgtcatcacctgatatgatccgcagttggtcatacggtgaggtgaaaaag
ccggaaacaatcaattaccgtactttcaagccagaacgtgacggcttgttctgtgcgcgt
atttttggtccggtaaaagactacgaatgtttgtgtggtaaatacaagcgtttgaagcac
cgtggcgttatctgtgagaagtgtggcgttgaagttacactgaccaaggtacgtcgtgag
cgtatgggtcacatcgaactggccagcccggttgcacatatttggttccttaagtcactg
ccgtctcgtatcggtttgatgctggacatgacgctgcgtgacatcgaacgcgtgctgtac
ttcgaatcttatgtggtaaccgaaggtggcttgacgtcactggaacaaggccagattctg
accgaagaagaataccttgatgcgttggaagagcacggcgacgagttcgacgcgaagatg
ggtgcggaagccgtacttgatctgttacgcgccatcgacatcgatgctgagatccaacag
ctgcgtgaagagttgccggaaaccaattccgaaaccaagcgtaagaaaatcagcaagcgt
ctgaaattacttgagtcgttccaaatgtcaggtaacaagcctgagtggatgattctgaaa
gtattaccggtgttaccaccggatttgcgcccattagtaccgttggacggcggtcgtttc
gcgacttcggatctgaacgatctgtaccgtcgcgtgatcaaccgtaacaaccgtctgaag
cgtctgcttgacttagcagcacctgacatcatcgtacgtaacgaaaaacgtatgttgcag
gaagccgttgatgcgttgttagataatggtcgtcgtggccgtgctatcactggctcgaac
aagcgcccactgaaatcacttgccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacctgttgggtaaacgtgttgactactcaggtcgttcggttattaccgttggtcctaag
ttgcgcctgcatcagtgtggtctgcctaagaagatggcattggaactgttcaagccattt
atttacggcaaacttgagcgccgtggcttggcaacaaccatcaaagccgcgaagaagatg
gttgagcgtgaaaccgcagaggtttgggacgttcttgatgaagtcatcaaagagcatccg
gtgctgttgaaccgtgccccaacacttcaccgtttgggtattcaggcattcgaaccggta
ctgatcgaaggtaaggcaattcagttgcacccattggtgtgtgcggcctataacgccgac
ttcgacggtgaccaaatggccgttcacttaccgttgacgctagaagcgcagctagaagcg
cgtgcgttgatgatgtcgaccaacaacgtactgtcgccagccagtggtgatccgatcatc
gttccttcacaggacgttgtcttaggtctgtactacatgaccaaagaaaagatcaatgcc
aaaggcgaaggcatggcgtttaagagcccgtcggaagctgaaaaagcctaccgtaacggc
ttggttgaactgcactctcgcgtgaaggtacgtatcacggataccaccattcacgaagac
ggcaccaaagaaaccaaaacgcaattgcgtgatacgaccgtcggtcgtgcattgttgtca
ctgatcatgccgaaaggcttaccgtttgagctgatcgatcagccaatgggtaaaaagcca
attgctcgtatgctaaaccaggcataccgtgatttaggtctgaaagacaccgttattttt
gctgaccaggttatgtacacaggtttccattacgcaatggtctccggtgcatcggttggt
atcaacgatatggttatcccggatgccaaaaaagaaatcgttgaagctgcggaagaagaa
gtggcagagattcaggagcagtttgaatcaggtctggtaaccgcgggcgagaaatacaac
aaagttatcgacatttggtcaaccgctaacgagaaagtctcgaaagcgatgatggacaac
ctgtcgaaagaaattgttatcaacaaagacggtaaagaagaagagcaggcatcatttaac
tctatctttatgatggcggactcgggcgctcgtggtagccccgcacagattcgtcagttg
gccggtatgcgtggtctgatggcgaagccggatggctcaatcatcgaaacgccaatcgtt
gctaacttccgtgaaggtttgaacgtacttcagtacttcatctcaacccacggtgcgcgt
aaaggtttggccgatactgcattgaagaccgcgaactcaggttatctgacccgtcgtctg
gttgacgtttcacaagacgttgtgatcatggaagaagattgtggcacgttcgaaggcctg
atcatgaagccattgatcgaaggtggtgacgttgttgaaccattgcgcgaacgtgtactg
ggtcgtgtggtctgtgaagacgtcctcaagcctggttctgatgaagtgctgctgccacgc
aacaccttgttggacgagaagaactgcgacatcctcgaagagaactccatcgatgaagtt
aaagttcgctcggtcatcacctgtgacacggactttggtgtttgtgctcactgttacggc
cgtgacttggctcgtggccacatggttaaccaaggtgaggcagttggtgttatcgcggct
cagtccatcggtgaaccgggtacacagcttaccatgcgtaccttccacattggtggtgcg
gcatcacgggcgacagcagaaaacagtgtccaggttaaaaacccgggtaccatcaagcta
cacaacgcgaaatgggttgttaacagcgataaagcgcacgtgattacctcacgctcgacc
gagttgacgctgattgatgagtatggtcgtgaacgtgagcgctataaagtgccttacggt
gcggtactgaagaaaggtgaaggcgacgcagttgaaggcggtgaaaccgttgcaaactgg
gatccgcacacgcacccaatcattaccgaggtagaaggtcgcatcaagtttgttgacttg
attgatggtgtcaccatgactcgtcagaccgacgaactgaccggtctttcaagcgttgtt
gtactggaaacaggtcaacgtaccagcgccggtaaagacatgcgtccgatggtgaaactg
gtggatgagaaaggtaacgacgtaaacatcgttggtaccgatatcccagcgcagtacttc
ctgccgggtaacgcgatcatcaacctggaagacaacgccgaagtgaaagtgggtgatacc
cttgcacgtattccgcaagaaggttcgaaaactcgcgacatcaccggtggtctgccacgg
gttgctgacttgttcgaagcgcgccgtccgaaagagcctgcgattcttgctgaaatcacc
ggtacggtgtcattcggtaaagaaactaaaggtaaacgtcgtctattgatcacaccaacc
gatggcggtgatcagtacgaagagatgattccgaagtggcgtcagctgaacgtgtttgaa
ggtgaacacgttgagaaaggtgaagttatcgcggacggcccggaagcgccgcacgatatc
cttcgcttgcgtggtgttagcgcggtagcaaactacatcgttaacgaagtgcaggaagtt
taccgcttacaaggtgttaagattaacgataagcacatcgaaactatcgttcgtcagatg
ctgcgtaaagcacttatcctgcgcgctaacgacactaacttgctggaaggcgaaatggtt
gaaatgtctgaggtactggcagcaaacgcaaaagccgaagcagaaggcaaacagcctgcg
accttcgagcgtcagctgttgggtattaccaaagcatcactgtcaactgagtcgtttatt
tctgcggcctcgttccaggagacgactcgtgtcctgaccgaagcggccgttggcggcaag
aaagacagtctgcgcggactgaaagaaaacgttatcgtaggtcgactgattcctgccggt
accggctattcgtatcacaaggaacgcatgcagcgtcgccttgacgaaatgcaggtggta
gaagaagcgcctaagatgacggctgaagaagcagaacagcaactggctgacgccctaaat
gcgggtggccagagcgatgatagtgcagaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (22)   

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