KEGG   Idiomarina loihiensis L2TR: IL2381
Entry
IL2381            CDS       T00218                                 
Symbol
rpoZ
Name
(GenBank) DNA-directed RNA polymerase omega subunit
  KO
K03060  DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
Organism
ilo  Idiomarina loihiensis L2TR
Pathway
ilo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ilo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    IL2381 (rpoZ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ilo03021]
    IL2381 (rpoZ)
   03400 DNA repair and recombination proteins [BR:ilo03400]
    IL2381 (rpoZ)
Enzymes [BR:ilo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     IL2381 (rpoZ)
Transcription machinery [BR:ilo03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     IL2381 (rpoZ)
DNA repair and recombination proteins [BR:ilo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      IL2381 (rpoZ)
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-ProteinID: AAV83213
UniProt: Q5QYI0
Position
complement(2553700..2553969)
AA seq 89 aa
MARVTVEDAVDRVGNRFDLILLASRRARQLANGKEPLVETKNEKPTVIALREIEQGLIDN
ERLDIEDQAAQKQQDAEELRAVDALRGIE
NT seq 270 nt   +upstreamnt  +downstreamnt
atggctcgcgtaactgtagaagatgctgtagaccgtgttggtaaccgttttgatttaatt
ttgttagcctcacgccgcgcgcgtcagttggccaatggtaaagagccattagttgaaaca
aaaaacgaaaaaccaactgttattgctttgcgtgaaatagagcaaggccttatcgacaat
gaacgccttgatattgaagatcaggcggctcaaaagcagcaagacgctgaagaactgcgt
gcggtagatgcactacgcggtatcgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (1)   
   Pfam (1)   
All databases (28)   

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