KEGG   Ipomoea nil (Japanese morning glory): 109146511
Entry
109146511         CDS       T04663                                 
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
  KO
K10601  E3 ubiquitin-protein ligase synoviolin [EC:2.3.2.27]
Organism
ini  Ipomoea nil (Japanese morning glory)
Pathway
ini04120  Ubiquitin mediated proteolysis
ini04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:ini00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    109146511
   04120 Ubiquitin mediated proteolysis
    109146511
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ini04121]
    109146511
Enzymes [BR:ini01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     109146511
Ubiquitin system [BR:ini04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    109146511
SSDB
Motif
Pfam: zf-RING_2 zf-rbx1 zf-C3HC4 zf-RING_UBOX zf-C3HC4_2 zf-C3HC4_3 zf-ANAPC11 zf-RING_16 zf-RING_5 zf-RING_11 Prok-RING_4
Other DBs
NCBI-GeneID: 109146511
NCBI-ProteinID: XP_019149717
Position
Un
AA seq 529 aa
MLRLQTYAGLSLIATLAVIYHAFNSRGQFYPATVYLSTSKICLVVLLNMGLVLMCILWQL
TKKIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTTLLLIKALHWLA
QKRVEYIETTPTVPLLSHIRIVSFMGFLLFIDSLFLYNSVNYLIQTRQASVSLFFSFEYM
ILATATVSTFVKYIFYVSDMLMEGQWERKAVYTFYLELIRDLLHLSMYLCFFLVIFINYG
VPLHLIRELYETFRNFKIRIADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRAQVVPPENGTSQTGPTGPRADSQQGPSVAS
SSQGSQADGERNSNTNQHQARIQAAAAAASIYGKSFVYTNTPSHAQLWSPGFALRPPPNK
PSDGSASVSSGGEHALGEHSQPRQFANASFTQFPQYTFVPFQLPGHADIGSSSGPPTGDM
HPEVKKKVIEEQIKALQHELTLLHKPNTENKTASTETCDGKGKAVSSSS
NT seq 1590 nt   +upstreamnt  +downstreamnt
atgttgaggctgcaaacatatgcagggcttagtctaatagccacactggctgttatttac
catgctttcaatagtagaggccaattttacccagcaacggtttacttatcaacctcgaag
atctgtctggtggttctgcttaacatgggtctggtccttatgtgcattttgtggcaatta
acaaagaaaatattccttggttcccttcgggaggcggaggttgagaggctcaatgagcag
tcatggcgggaagtcatggaaatacttttcgccatcacaatcttccgacaagacttttca
gttacttttcttgctatggttactacacttctgcttatcaaggctttgcattggttggct
cagaagagagttgaatacattgaaacaaccccaacagttcctttgttgtcccacattcgc
attgtctccttcatgggatttctcctctttatagatagtctctttttgtacaactccgta
aactacttgatacagacaagacaggcttcggtttctctcttcttttcatttgagtacatg
atccttgcaacagctactgtgtcaacatttgtgaaatatatattctatgttagtgacatg
cttatggaaggacagtgggagagaaaggctgtctacacattctacttagaacttatccga
gacttacttcatttgtctatgtacctatgcttcttccttgtcatttttatcaactatggt
gtacctctgcatttgattcgggagctttatgagacatttcgcaacttcaaaattcgtatt
gctgattacatacgctatcggaagatcacttcaaacatgaacgatcgttttccagatgct
acaccagaagaactcaatgcaagtgatgctacctgcatcatttgccgtgaggagatgact
accgcaaagaaactcatttgtgggcatctttttcacgtgcattgcctccgttcatggttg
gaaaggcagcacacctgtcctacctgtagagcccaagttgtgcctcctgaaaatgggaca
agtcaaactgggccaacaggaccacgagctgattctcagcaaggaccaagtgttgcaagt
tcatcccagggttcacaagctgatggtgagcgaaatagcaatactaaccagcatcaagct
aggatacaagctgctgctgctgctgcttcaatatatgggaaatcttttgtttatactaac
actccctcacatgcacaattgtggtcccctggatttgccttgcgtcctccccccaataaa
ccttcagatggctctgctagtgtaagctcaggcggtgagcatgctctgggtgaacattca
cagccacgtcagttcgcaaacgcaagctttactcagtttccacagtatacttttgttccc
ttccaacttcctgggcacgctgacattggatctagcagtggcccccctactggagatatg
catcccgaggttaagaagaaagtcattgaagaacaaattaaggctctgcaacacgagctc
actcttctacataagccaaataccgagaacaagactgcttctacagaaacttgcgacggc
aagggaaaagccgtgtcctcatcatcttag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (11)   
   Pfam (11)   
All databases (36)   

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