KEGG   Ipomoea nil (Japanese morning glory): 109149483
Entry
109149483         CDS       T04663                                 
Name
(RefSeq) polyadenylate-binding protein 2
  KO
K13126  polyadenylate-binding protein
Organism
ini  Ipomoea nil (Japanese morning glory)
Pathway
ini03015  mRNA surveillance pathway
ini03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ini00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    109149483
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109149483
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ini03019]
    109149483
   03041 Spliceosome [BR:ini03041]
    109149483
Messenger RNA biogenesis [BR:ini03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     109149483
   mRNA cycle factors
    Stress granule specific factors
     109149483
Spliceosome [BR:ini03041]
 Complex C
  Other components
   Complex C specific factors
    109149483
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_occluded
Other DBs
NCBI-GeneID: 109149483
NCBI-ProteinID: XP_019152816
Position
Un
AA seq 654 aa
MAATAVHTAVAALAGATSAVSVGPAPPLSPTGAMVAFTNSSLYVGDLDPSVDEGQLYDLF
NQVAQVVSVRVCRDQSRRVSLGYAYVNFGTPQDALSAREVLNFTPVNGKPIRIMFSHRDP
SIRKTGFANVYIKNLESSIDNKALYETFAAFGTVLSCKVAVDGNGKSKGHGFVQFDAEEA
ANNAIKRLNGMLINDKQVYVGRFIRRQERSGGYVPEKFTNVYVKNLSETTSDEDLDKLFK
KFGPITSAVVMKDGNGKSKCFGFVNYQNTDDAAAAVKELNGSTMNDKVLYVSRAQKKSER
EAELKAKFEQERASRFDKLKHSNLYLKNLDDSITDEKLKEIFSGYGTISSCKVMLDPQGT
SKGAGFVAFTNPDEAQRALTEMNGKLIGRKPLYVAVAQRKDERRAWLQAHFAQMRPTGAM
PPLPAGIPGYHPGAPRLAAPQQIYFGQGTPGLMPPQAAAGYGFQQPLVPGLCPGVAPNFI
MPYQLHRQGQAPQRVGARRGANTQPTQQWMQRNSNQGGLGRYTANGNHPTSLASQGLMGP
IMPLPFDVSGGVAAPAMDNQRPAPIPTPTLASTLASASPEDQRMMLGEQLYPLVERLERD
QAGKVTGMLLEMDQTEVLHLIESPEALKKKVAEAMEVLRSASDSNGGDKFASAI
NT seq 1965 nt   +upstreamnt  +downstreamnt
atggcggctactgcggtgcacacggcggttgcggctctggccggcgcgacttctgctgtt
tcggtgggcccggcgccgcccctgagtccgacgggcgcaatggtagcgttcacgaactcg
tcgctctacgtcggcgatctcgatccttcggtcgacgaaggacaactgtacgatctgttc
aaccaggttgcgcaagtggtatcggttagggtttgcagggatcagtccagacgcgtctcc
ctcggctatgcctacgttaatttcggcactccacaagatgcccttagtgcaagggaagtt
ttgaactttacgcccgtcaatggaaagcccataaggattatgttttctcatcgagatccc
agtatccgcaagactggatttgcaaatgtttacataaagaatttggagtcctccattgat
aacaaggctttgtatgagacatttgctgcctttgggactgttctttcctgcaaggttgcc
gttgatggtaatgggaaatcgaaagggcatgggtttgtacagtttgatgcagaggaggct
gcaaacaatgcaatcaagcgactgaatggcatgctgataaatgataaacaagtttatgtt
ggccgctttattcgcagacaggaaaggagtggaggctatgttccagagaagtttaccaac
gtttatgtgaagaatctttctgaaacaacatcggatgaggatctcgacaagctttttaag
aaatttggtcccatcaccagtgctgttgttatgaaggatggcaatgggaaatccaaatgc
tttgggtttgttaactaccaaaacacagatgatgctgctgctgctgtcaaagaattgaat
ggaagtaccatgaatgacaaggttttgtatgtgagtagggctcagaagaaatctgaaagg
gaagcagaattgaaggcaaaatttgagcaagagagagccagtagatttgacaagttaaag
cactctaacctgtatttgaaaaatcttgatgacagcataactgatgaaaaactgaaagag
atattctcagggtacggaaccatatcatcgtgcaaggtgatgcttgatccacaaggaacc
agcaagggtgctggctttgtagcctttactaacccagatgaagctcaaagagccttgact
gaaatgaatggaaaattgattggaagaaagcctttgtatgttgctgttgcccagcgcaaa
gacgaaaggagggcttggctacaggcacattttgcacagatgcgaccaacaggtgcaatg
ccaccattgcctgcagggatccctggatatcaccctggggcacccagacttgctgcccct
caacagatctattttggtcaaggtactcctggattgatgccccctcaggcggctgccggg
tatggttttcagcaaccacttgtgccagggctgtgtcctggtgttgccccgaattttatc
atgccataccaactccatcgccagggacaagctccacaacgtgttggtgcgaggagaggt
gcaaatactcaaccaacacagcagtggatgcagcggaactccaaccaaggcggtcttggt
agatacacagcaaatggtaatcatcctactagtctggcatctcaaggtctgatggggcca
attatgccattgccattcgacgtttctggaggggttgcagcacctgctatggacaatcaa
cgccctgcaccaattcccacaccaactcttgcttcaaccttggcctccgcttcccctgag
gaccagcgaatgatgcttggagagcagttatatccgctagtagagcggcttgaacgtgac
caagcgggaaaagtaacaggcatgttgttggagatggaccagacagaagtgctccacctt
attgagtcccctgaggccctcaagaagaaagtcgctgaggccatggaagtccttcgctct
gcttctgactctaatggcggcgataagtttgcctctgcaatctaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (69)   
   KEGG ORTHOLOGY (1)   
   RefGene (65)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (81)   

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