KEGG   Ipomoea nil (Japanese morning glory): 109155590
Entry
109155590         CDS       T04663                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 8B-like
  KO
K03016  DNA-directed RNA polymerases I, II, and III subunit RPABC3
Organism
ini  Ipomoea nil (Japanese morning glory)
Pathway
ini03020  RNA polymerase
ini03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ini00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    109155590
  09124 Replication and repair
   03420 Nucleotide excision repair
    109155590
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ini03021]
    109155590
   03400 DNA repair and recombination proteins [BR:ini03400]
    109155590
Transcription machinery [BR:ini03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     109155590
  RNA polymerase III system
   RNA polymerase III
     109155590
  RNA polymerase I system
   RNA polymerase I
     109155590
DNA repair and recombination proteins [BR:ini03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      109155590
SSDB
Motif
Pfam: RNA_pol_Rpb8 RNA_pol_RpbG
Other DBs
NCBI-GeneID: 109155590
NCBI-ProteinID: XP_019158748
Position
Un
AA seq 140 aa
MSGFHFDDIIKVVEVDADGKKYDKVSRIDAKSQDGKTDIVLDINSELYPVKKNELYRMVL
SQTLALDGSATGSNPEGKLKSLADKFEYVMHGLLYKVAEESSKVVAYISFGGLQLKLSSE
PLNMHKFKLDQRLFILLRKM
NT seq 423 nt   +upstreamnt  +downstreamnt
atgtctggttttcactttgatgatattatcaaggtcgttgaagtggatgctgatggtaaa
aagtatgacaaagtttctcggattgatgcaaagagtcaagatggtaagacagatatagtg
ctagatataaactcggagctatatcctgttaagaagaatgagttgtataggatggtgtta
tcacaaactcttgctttagatggttcagctactggtagcaaccctgagggtaagctgaaa
tcgcttgcggacaaatttgagtatgtcatgcatggactgttatataaggttgcagaggaa
tcatctaaagtggtggcatatatttcttttggaggacttcaactgaagctgagcagtgag
ccgctgaacatgcacaaatttaagcttgaccaaaggctgtttattcttttgaggaaaatg
tga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (2)   
   Pfam (2)   
All databases (21)   

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