KEGG   Ipomoea nil (Japanese morning glory): 109161912
Entry
109161912         CDS       T04663                                 
Name
(RefSeq) histone deacetylase 19-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
ini  Ipomoea nil (Japanese morning glory)
Pathway
ini03082  ATP-dependent chromatin remodeling
ini03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ini00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    109161912
   03083 Polycomb repressive complex
    109161912
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ini03036]
    109161912
Enzymes [BR:ini01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     109161912
Chromosome and associated proteins [BR:ini03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     109161912
   HDAC complexes
    Sin3A-HDAC complex
     109161912
    BRAF-HDAC complex
     109161912
    REST complex
     109161912
    SHIP complex
     109161912
    MiDAC complex
     109161912
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     109161912
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    109161912
  Chromatin remodeling factors
   NuRD complex
    109161912
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 109161912
NCBI-ProteinID: XP_019166024
Position
Un
AA seq 490 aa
MDTGGNSLPSGPDGKKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMH
VVKPLPARDKDLCRFHADDYVSFLRSITPDSQQDNIRLLKRFNVGEDCPVFDGLYSFCQT
YAGGSVGGAVKLNHGQCDIAVNWSGGLHHAKKCEASGFCYVNDIVLAILELLKVHERVLY
VDIDIHHGDGVEEAFYATDRVMTVSFHKFGDYFPGTGDIGDLGYGKGKYYSLNVPLDDGI
DDESYQMLFKPIMGKVMEVFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFN
VPLLLLGGGGYTIRNVARCWCYETGVALGMELEDKMPQHEYYEYFGPDYTLHVAPSNMEN
KNSRQMLEEMRAKLLDNLSKLQHAPSVQFQERPPDTEFPEADEDQDVKDERWTHDSDVKD
DLRKALSGRVKREILEPEAMGTDDMQIDERPRELESTFIDSKGSIAAAVAEAQMQGNSNK
PFDQPVDMNL
NT seq 1473 nt   +upstreamnt  +downstreamnt
atggatactggaggcaattcattaccatctggaccagatgggaagaagcgaaaagttagt
tatttctatgacccagaagttgggaattactattatggtcaaggtcacccaatgaagcca
cacagaattcggatgacacatgctcttcttgcacactatgggctattacaacatatgcat
gttgtgaagccccttcctgctagagataaggatctttgcaggtttcatgcggatgattat
gtttctttcttgagaagcattactccagattcacaacaagataatattaggctgctgaag
agatttaatgttggtgaagactgccctgtttttgatggcctctactctttctgtcaaact
tatgctggaggttctgttggtggggcagtgaaattaaaccatggacaatgtgatattgca
gtgaattggtccggtgggttacaccatgcaaagaagtgtgaggcttctggtttttgctat
gtgaatgatatagtgcttgccatcttagagctcctcaaagtgcatgagcgagtcttgtat
gtagacattgatatccatcatggtgatggtgttgaagaggccttctatgctacagacagg
gtcatgacggtttcatttcataaatttggagattatttccctgggactggggatataggt
gatcttggatacgggaagggaaaatattactctcttaatgttccattagatgatggaatc
gatgatgaaagctatcagatgctatttaagccgataatgggcaaagtgatggaagttttt
aagcctggtgctgtagtgctgcaatgcggtgccgattcattgtccggagacaggttgggt
tgctttaatctctcaataaaagggcacgcagagtgtgtcagatacatgaggtcttttaat
gtaccgttgctgttgctggggggaggtggctacacaatacgcaatgtggctcgttgctgg
tgctatgaaactggagtcgcacttgggatggaacttgaagacaaaatgccacagcatgaa
tattacgagtactttggcccagattatactcttcatgtcgctcctagtaacatggagaac
aaaaattctcgtcaaatgttagaagaaatgagagcaaagcttctggataatctctcaaaa
cttcagcatgcaccgagtgtgcagttccaggagcggccacccgatactgaatttccagag
gccgatgaagatcaggatgtcaaagatgaaaggtggactcatgattcagatgtaaaggat
gacctgcgaaaggcactatcagggcgagttaagagggagattcttgaacctgaagccatg
ggcactgatgatatgcaaattgacgagcgccctagggaactggagtcgacattcatagat
tcaaagggttcaatagcagcagcagtagcagaagcccaaatgcaaggaaactctaacaag
ccctttgatcaaccagtggatatgaacttgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (20)   

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