KEGG   Ipomoea nil (Japanese morning glory): 109165537
Entry
109165537         CDS       T04663                                 
Name
(RefSeq) DNA repair helicase XPB1-like
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
ini  Ipomoea nil (Japanese morning glory)
Pathway
ini03022  Basal transcription factors
ini03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ini00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    109165537
  09124 Replication and repair
   03420 Nucleotide excision repair
    109165537
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ini03021]
    109165537
   03400 DNA repair and recombination proteins [BR:ini03400]
    109165537
Enzymes [BR:ini01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     109165537
Transcription machinery [BR:ini03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     109165537
DNA repair and recombination proteins [BR:ini03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     109165537
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C SNF2-rel_dom
Other DBs
NCBI-GeneID: 109165537
NCBI-ProteinID: XP_019169888
Position
Un
AA seq 765 aa
MGHHGDKGRPSKKFKFSSKEEFRSAETDDSYYPDEINDDPRDGEGEGKKRDFTKLELKLD
HGNRPLWACADGRIFLETFSALYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG
LETETIISVLSKLSKTKLPKEMIDFIHASTANYGKVKLVLKKNRYFIESPFPEVLKTLLR
DEVIGRSRLMSAGVHGSDGFTVSKSAGEIEGRHDELLNEAELAAAAEEKETHSFEIDPSQ
VENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRAR
SGIIVLPCGAGKSLVGVSAASRIKKSCLCLATNAVSVDQWAFQFKLWSTIREEQICRFTS
DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK
VISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP
MTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEY
AMKLRKPMIYGATSHIERTKILEAFKTSKDVNTIFLSKVGDNSIDIPEANVIIQISSHAG
SRRQEAQRLGRILRAKGRLQDRMAGGKEEYNAFFYSLVSTDTHEMYYSTKRQQFLIDQGY
SFKVITSLPPSDSGPELNYHRLDDQLSLLGKVLSAGDDAVGLEQLEEDTDDIALQRARRT
MGSMSAMSGAHGMVYMEYHNGKRVMQKSKPKDPAKRHHLFKKRFG
NT seq 2298 nt   +upstreamnt  +downstreamnt
atgggtcatcacggtgataaaggtcgacccagcaaaaagttcaagttttcctcgaaggag
gaatttaggtctgctgaaacagatgattcgtattatccagatgaaatcaatgatgatcct
cgtgatggagagggtgaagggaagaaaagagatttcacgaaacttgaactcaaacttgat
cacggtaatcgccctttgtgggcttgtgctgatggtaggattttcctcgaaacattctca
gcattatacaaacaggcatatgactttctcatagccattgctgaacctgtttgcaggccg
gagtctatgcatgagtacaatttgacacctcactctttgtatgcggctgtgtccgttggt
ttggagactgaaactataatatctgttttaagcaaattgtcaaaaactaagcttccgaaa
gagatgattgattttatacatgcttctactgccaactatggcaaagtgaagctcgtgctt
aagaagaaccggtattttattgaatctccatttcctgaggtactgaaaacgttgcttcga
gatgaagttataggtcggtctagacttatgtctgcgggagttcatggaagtgatggattt
actgtcagcaagtctgcgggtgaaatagaaggtagacatgatgagttgttaaatgaagca
gagctggcagcagcagctgaagagaaagaaactcattcatttgaaattgatccttctcag
gttgaaaatgtgaagcaacgttgcttgccaaatgccttgaattatcccatgttagaggaa
tatgactttagaaatgatacggtcaatcctgatcttgatatggaattgaaacctcatgca
caaccacgaccttatcaagaaaagagtctcagtaagatgtttggaaatggtagagctaga
tcaggtatcattgttttgccttgtggtgctgggaagtctttagtcggagtgtctgcagca
tccagaattaaaaaaagctgtctttgtttagcaactaatgctgtctctgtggatcaatgg
gctttccagttcaagttatggtcaactattcgagaagaacagatatgccgtttcacatct
gatagcaaagaaagattccgtggtaatgctggtgttgtggtgaccacatataacatggtt
gcttttggtggaaaacgttctgaagaatctgagaagatcattgaagaaataagaaacaga
gagtggggtttgcttcttatggacgaggtccacgtggttccagcacacatgtttcgaaag
gttatcagcattactaaatctcactgcaaacttggactcactgcaacacttgtcagagag
gatgaaagaatcacagatctcaactttcttattggccccaagttgtacgaggcaaattgg
ttggacttagtgaagggaggatttattgcgaatgtgcagtgtgctgaggtttggtgtcca
atgacaaaggaattttttgctgaatatttgaagaaggagaactctaagaagaagcaggca
ctttatgtgatgaatccaaacaaattcagggcctgtgagtttcttatccggttccatgaa
caacagcgtggggataagataattgtttttgctgacaatctatttgctctcaccgaatat
gcaatgaagcttcggaaacctatgatctatggtgctacaagccatatagaaagaacaaaa
attcttgaggcatttaaaactagcaaggatgtgaacaccatattcctttctaaggtcggt
gataattctatagatattcctgaagcaaatgttataatacaaatttcatctcatgctggt
tcgagacgacaggaagcacaacgtcttgggcgtattcttagggcaaagggacgtcttcaa
gacaggatggcgggaggtaaagaggagtataatgctttcttttactctcttgtatcaaca
gatactcatgagatgtattactcaactaaaagacaacaattcttgattgatcaaggttat
agcttcaaggtcatcacaagcttgccaccttctgattcaggacctgaattgaattaccat
cgtcttgatgaccaactttcgcttcttggaaaagtactaagtgctggtgacgatgctgtt
ggtttggagcaactggaagaagatacagatgatatagcccttcagagagcccgtcgcacc
atgggatctatgagcgcaatgtcaggagcacacgggatggtttatatggaataccataat
ggaaagagggtgatgcaaaagagcaaaccaaaagatccagccaagagacaccatttattc
aagaagcgttttggctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (26)   

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