KEGG   Idiomarina piscisalsi: CEW91_04555
Entry
CEW91_04555       CDS       T04931                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ipi  Idiomarina piscisalsi
Pathway
ipi03030  DNA replication
ipi03410  Base excision repair
ipi03420  Nucleotide excision repair
ipi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ipi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CEW91_04555
   03410 Base excision repair
    CEW91_04555
   03420 Nucleotide excision repair
    CEW91_04555
   03430 Mismatch repair
    CEW91_04555
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ipi03032]
    CEW91_04555
   03400 DNA repair and recombination proteins [BR:ipi03400]
    CEW91_04555
Enzymes [BR:ipi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CEW91_04555
DNA replication proteins [BR:ipi03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CEW91_04555
DNA repair and recombination proteins [BR:ipi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CEW91_04555
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CEW91_04555
   MMR (mismatch excision repair)
    DNA ligase
     CEW91_04555
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CEW91_04555
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH HHH_3 DNA_ligase_A_M DZR_2 SHE3
Other DBs
NCBI-ProteinID: ASG65448
Position
937487..939499
AA seq 670 aa
MSQSTAQRMQELEQLLNRYNKEYYENDEPSVPDAEYDKLFRELQELEKQNPDLKSKTSPT
AKVGGKPLAKFNTVKHEVPMLSLDNAFSAEEFAAFSKRIGQKLDEVTKVTFCCEPKLDGA
AVSLLYESGILVRGATRGDGESGEDITENVKTIRNIPLKLKGDVPDRLEVRGEVVMPIGA
FDRFNDKARQQGEKVFANPRNAAAGSLRQLDSRITAKRPLHFYAYSLGLVSEHTVLPDSH
YERLQQLAEWGLPVNSEIERVDSVEGCDSYYEKILERRDSLNYDIDGVVFKIDTIALQET
LGFVARAPRWAIARKFPAQEQLTIITGVDFQVGRTGAITPVARLKPVSVGGVTVSNATLH
NADEIERLGVQIGDTVSIRRAGDVIPQVVSVLKDKRPMDAQDIIFPTHCPVCDSDVERIE
GEAVARCSGGLYCAAQRKEAIKHFASRKAMDIDGLGDKLVDVLVEKGWIKSPADLYRLSK
AELATLPRMATKSAENLKSAIAATRETTLARFLYALGIREVGEATAKALARHFKTFEAIQ
SASSEQLQEVPDVGTVVAEHIVRFFREPHNENVVKELREFIHWPEGEDAGDIQSDRLAGN
TYVITGTLSTMTRDEAKQALEALGAKVSGSVSKKTTALIAGESAGSKLTKAQSLGLSILS
EDELKELLKS
NT seq 2013 nt   +upstreamnt  +downstreamnt
atgagtcaatctactgcccagcgaatgcaagagctggaacaattactgaatcgctataac
aaagaatattacgaaaatgatgagccgtcggttcccgatgctgagtacgataaactattt
cgtgaattgcaggaactggaaaagcaaaatccagacttaaaaagtaagacgtcgccaacg
gctaaagtgggcggtaagccgttagccaaatttaatacggtaaaacatgaagtgccgatg
ttgtctttagataatgcgttttctgcggaagagtttgcggcattctctaagcgcattggg
caaaagctggatgaagtaactaaagtcactttctgttgcgaacccaagctggatggtgct
gcagtgagtttgctgtatgagtcaggaatactagtgcgtggcgcaacccgtggtgacggt
gaaagtggcgaggacattactgaaaatgtcaaaaccattcgcaacattcccctcaagtta
aaaggcgatgttcctgaccgactggaagtcagaggcgaggtcgtaatgccgattggcgcc
tttgatcgctttaacgacaaggcgcgtcaacagggagagaaagtatttgctaacccaaga
aacgcggcggcgggcagtttaagacaactggactcccgaataactgccaagcggcctttg
catttttacgcttatagcctggggttagtgtctgaacatacggtactgcccgacagtcat
tatgaacgtctgcagcaattagccgaatgggggcttcccgttaacagtgaaattgaacgg
gtagactctgttgaaggttgtgacagttactatgaaaaaattcttgagcgcagagattcg
ctgaattacgacattgatggggtggtttttaaaatagataccatcgcactgcaggaaacg
cttggctttgttgctagagcgcctcgctgggctattgcccgaaaattcccggcacaagag
caactgacgattattactggcgtcgactttcaggtaggacgtactggcgcaattacacca
gtcgctcgcttgaaaccggtaagtgtgggaggtgttaccgtatcgaatgcaaccctgcat
aacgccgatgaaattgagcgcttgggtgtgcaaattggggacacagtgagtatcaggcgc
gccggtgatgtcattccacaagtcgtcagtgtgttaaaagacaagcgtccgatggatgcg
caggacattattttcccgacacattgtcccgtgtgtgattctgacgttgagcgcattgag
ggcgaggccgtagctcgttgcagtggcggactctattgtgcggctcaacgcaaagaagca
attaagcactttgcctcgcgtaaagccatggatatcgacgggttaggagacaaactggtt
gatgtcttggttgaaaagggctggataaagtccccagctgacttataccgtttgagtaaa
gccgagttggccaccttgccaagaatggcgactaaatccgctgaaaatctaaaaagcgca
atagcagcaaccagagagacaacgttggctcgctttctctatgcgttaggtattagagag
gtaggtgaagcgactgcaaaggccttagccagacactttaaaacctttgaggcgattcag
tccgctagcagtgaacaattgcaggaagtccctgatgttggcacggtcgtggctgaacac
attgtgcgctttttccgcgaaccgcataacgaaaacgtcgtgaaagagctacgtgagttt
attcattggccagaaggcgaagatgcgggcgacatacaaagcgaccgtttagccggaaat
acttacgtcattaccggtacgttgtcgacaatgacccgggacgaagccaaacaggcgcta
gaagcgttaggagcgaaagtcagtgggagtgtgtctaagaaaacaaccgcgctaattgcc
ggagaaagcgccggttcaaaactgacgaaagcccagtcgcttgggctttcgatactgtcc
gaagacgaactaaaagagctgttaaagagttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (12)   
   Pfam (12)   
All databases (31)   

Download RDF
DBGET integrated database retrieval system