KEGG   Ictalurus punctatus (channel catfish): 108257023
Entry
108257023         CDS       T04658                                 
Name
(RefSeq) syntaxin-1B
  KO
K08486  syntaxin 1B/2/3
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu04130  SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04130 SNARE interactions in vesicular transport
    108257023
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ipu04131]
    108257023
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ipu04147]
    108257023
Membrane trafficking [BR:ipu04131]
 SNARE
  Syntaxin (Qa)
   Stx-PM
    108257023
Exosome [BR:ipu04147]
 Exosomal proteins
  Exosomal proteins of epithelial cells
   108257023
  Exosomal proteins of other body fluids (saliva and urine)
   108257023
SSDB
Motif
Pfam: Syntaxin SNARE Syntaxin_2 AAA_13 Lzipper-MIP1 GNVR DUF4658 ETRAMP Relaxase_C
Other DBs
NCBI-GeneID: 108257023
NCBI-ProteinID: XP_017309888
Ensembl: ENSIPUG00000012795
UniProt: A0A2D0PTK7
Position
24:21644824..21686250
AA seq 288 aa
MKDRTQELRSAKDSDDDEEVVHIDRGNFMDEFFEQVEEIRGCIEKLSEDVEQVKKQHSAI
LAAPNPDEKTKQELEDLTADIKKTANKVRLKLKAIEQSIEQEEVMNRSSADLRIRKTQHS
TLSRKFVEVMTEYNTTQSKYRDRCKDRIQRQLEITGRTTTNEELEDMLESGKLAVFTDDI
KMDSQMTKQALNEIETRHTEIIKLENSIRELHDMFVDMAMLVESQGEMIDRIEYNVEHSV
DYVERAVSDTKKAVKYQSQARKKKIMIIICCVILGVVLASTIGGTLGF
NT seq 867 nt   +upstreamnt  +downstreamnt
atgaaggaccgcacacaggaactgcggagtgctaaggacagcgatgatgatgaggaagtt
gttcacatcgaccgaggaaactttatggatgagttcttcgagcaggtggaggagattcgc
ggctgcattgagaagctgtcggaggacgtggagcaggtgaagaaacagcacagcgccata
ctggccgctcccaatcctgatgagaaaaccaagcaggagttggaggatctcacagctgac
attaagaagacagccaataaagtacgcttaaaattaaaagcaatcgagcagagcattgaa
caggaggaggtgatgaacagatcatcggcagacctgcgaatccgcaagacacagcattcc
accctgtcacgcaagtttgtggaggtgatgaccgagtacaacacgacgcagtccaaatac
agagaccgctgcaaagaccgcattcagagacagctggagatcactggaagaacaaccacc
aatgaagagctggaggacatgctggagagcgggaaactcgccgtcttcaccgatgatatt
aagatggactcccagatgaccaagcaggccctgaacgagatcgaaactcgtcacacagag
atcatcaaactggagaacagcatccgcgagctgcacgacatgtttgtggacatggccatg
ctggtggagagccagggggagatgattgacagaattgagtataacgtggaacattcggtg
gattacgtagagcgagctgtttccgacaccaagaaggctgttaaataccagagtcaggca
cgcaagaaaaaaatcatgatcatcatctgctgcgtaatcttgggtgtggtcttggcgtcc
actatcggaggaactctgggcttctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (9)   
   Pfam (9)   
All databases (31)   

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