KEGG   Ictalurus punctatus (channel catfish): 108260059
Entry
108260059         CDS       T04658                                 
Symbol
arhgef12b
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
  KO
K07532  Rho guanine nucleotide exchange factor 12
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu04270  Vascular smooth muscle contraction
ipu04625  C-type lectin receptor signaling pathway
ipu04810  Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09140 Cellular Processes
  09142 Cell motility
   04810 Regulation of actin cytoskeleton
    108260059 (arhgef12b)
 09150 Organismal Systems
  09151 Immune system
   04625 C-type lectin receptor signaling pathway
    108260059 (arhgef12b)
  09153 Circulatory system
   04270 Vascular smooth muscle contraction
    108260059 (arhgef12b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ipu04131]
    108260059 (arhgef12b)
Membrane trafficking [BR:ipu04131]
 Others
  Rho GTPase associated proteins
   Rho guanine nucleotide exchange factors (GEFs)
    108260059 (arhgef12b)
SSDB
Motif
Pfam: RGS-like PH_16 RhoGEF PDZ PDZ_6 PH_13 PDZ_2
Other DBs
NCBI-GeneID: 108260059
NCBI-ProteinID: XP_017315492
Ensembl: ENSIPUG00000022803
UniProt: A0A2D0QB20
Position
28:complement(3813518..3867371)
AA seq 1472 aa
MHRSDAEARSTCIGLRRWITIRFPKKPTRPGSILNKDHPPDKKPKSEKVSVPPTHDFDPT
ELPVHSVERRPESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGD
RIIKVNGTLVTHSNHVEVVELIKSGSYVALTVLGRPPGLPQIPLSEGEGDGDPLSSLSSP
HSPGPTVAERSSSSSTSPSDRITSPLPAWAMKEEYGRNPTARLLKDIQEAQKHIPLLQGQ
LGKATTAGQDGLLSRRPGEGDSEEGGGLGDVDASPSWHFDSESPVNSNSTPVTPSMIPES
PYQRDTPCHSPKPMPRFSLNSCPSPDGEDAVDLDSSYQCSAGSPLSRLPPPIIGAEDDDF
DTEQEQVNGQCSCFQTMELLKSRPAHLAVFLHHVVSQFDPAPLLCYLYAELYKQSNPKET
RRIYGELHSTFMDRSAQLKVAVPDSISADMERWKPDLIPEDVQRQHVQHLQDTFLPDIQK
HLEDFRQKRSMGLTLAEAELSRLDSERVRDRAALEKERSCSEHIITRINEVLLTTSATEE
EKCTAMQFVIQAYMKHLGVKVKESRGFEPKPKLINLLPKIKKTIKPEKDGGVEVLKKSRF
QIMRSHNKRPSRTDVSSITKALEQNKQRTQKQLSQNALAPTEQPEAPSAGRIRSSQSSDG
PDGSPGSINSPTFSASPVQSSDSTARELEPGATPLSALPRLGEVGPQAEGQDSSSSGTHF
DFTYPPDHLQEEEPETDRNPDGGTPRPIRRMEPLCTGEVQSEDDQAFEVEPEQDPPHWQT
LVSTEVLALLSPHEIKRQEVINELFYTERAHLRMLKVLDNVFYQRMTRESILPPADIKNI
FTNLEEIVQLHVSITEQMTAIRKKYETAVVDLIGDDLLSWFSGTEEEKIKRAVGTFCSNQ
PFALELIKSRQKKDQRFAAFVQEAESNRQCRRLQLKDMIPVEMQRLTKYPLLLENIAKYT
DDTEEKSKVKRACECCRQILNHVNQEVKEAENKQRLEDYQRRLDLSSLKQSEYPMIAEFK
NLNLTKRKMVHEGPLSWKVNKDKTIELYTLLLEDILVLLQRQDEKLILKCHSKNLAGTAE
TKHIFSPIIKLSTVLVRSVATDNKSFFVVSMSDYGAQIYELMAQTVSEQKTWHDLIGQRA
DSMKSLPQNDGEREADDEMNSGMPKMSKDPDRISTGSVQSPEKDATSSTEIMQIPPAGSN
PFDTKSEDEEEAEGEHLPQVQDEVQDEVQDEVQDEAEEDEEEAFLDPELADRLPFLKQRS
RHAIAVEEKDLDTFDLPPLMADEALRTLAALRQLLINHMDGQEDVDRDRERGEARLRELK
AGSLQGSEENAAPGGSVENGAERTETAHVKSENRLELPSGDTGFFETSEDFGSYMVLEGY
GGSGESSTDDDGQVCSTEPAAAGDSGIDLKKLLSSVSSQSRGPNFSRQIMTHLRLLQANL
QHLKDVESKYNQLCQRHSEQAATESEENKDKS
NT seq 4419 nt   +upstreamnt  +downstreamnt
atgcaccggtctgatgctgaagctcgcagcacctgtattggcctgagacgctggattact
atcaggtttcccaaaaaaccaaccagaccaggaagcattctcaacaaggaccacccccca
gacaagaagcccaagagtgagaaggtgtcagtgcctcctacacatgactttgaccccaca
gagctgcccgtgcacagtgtagagcgacggcccgagtcgtgtgggcttgttcagcggtgc
gtgatcatccagaaagacgagaatggcttcgggttgaccgtgagcggagacaacccagta
tttgtccagctggttaaagaagatggagctgctatgcgagctggcgttcagacgggtgat
agaataatcaaggtcaacgggacgttagtaacgcattccaatcatgtagaagtggtggag
ttaataaaatcgggctcatacgtggctctgacggtgttggggagacccccgggtctgcca
cagatccccttatccgagggagagggagatggagaccctctctcctccctcagctcccct
cactcccccggccccactgtagccgagcgctcatcctcttcctccacctctccctccgac
cgcatcacctccccactgcctgcatgggctatgaaggaggagtacggcagaaaccctaca
gcgagactactgaaggacatccaggaagctcagaagcacattcctctgcttcagggccaa
ctcggtaaagccaccacggctggacaggatggcctgctttctcgaagaccgggagaagga
gactccgaggaaggaggagggttaggagacgtggacgcctctccgtcctggcactttgac
tccgagtcacccgtgaacagcaactcgacgccggtcacgcccagtatgatcccagaaagc
ccgtaccaaagagacacaccatgccacagcccaaagccgatgccgcgcttcagcctcaac
tcgtgcccgtctcccgatggcgaggacgcggtcgacctggactcgagctatcagtgcagc
gcggggagcccgttgtcccgtctgccgcctcccatcatcggagcggaggacgatgacttc
gacaccgagcaggagcaggtgaacggtcagtgtagctgttttcagaccatggagctgttg
aagtctcggcctgctcacctcgcagtcttcctgcatcacgtggtctctcagtttgaccct
gcacctctgctgtgctacctctacgccgagctgtacaagcagagcaaccccaaagagacg
cggcggatatacggggaactccactccacgttcatggaccgatcggcgcaactgaaagta
gcggtgccggactccatctcggccgacatggaacgatggaagccagacttaattccagag
gacgtccaaagacagcatgtgcagcatctacaggacaccttcctacctgacatccagaaa
catctggaagacttcagacagaagcgcagtatgggcctgactctggccgaagccgagctc
agccggctcgactcggagcgcgtgcgagaccgcgcggccctggagaaagagcgctcgtgc
tcggagcatatcatcaccaggatcaacgaagtcttgttgacgacatcagccacagaggag
gagaagtgtaccgccatgcagttcgtcatccaggcctatatgaagcacctcggggtgaag
gtgaaggaatctcgagggtttgagcccaaacccaagctaataaaccttctccctaaaatc
aagaagacgataaaaccagagaaggatggaggtgtggaggtgctgaaaaagtcccgcttc
cagatcatgcgcagccacaacaagaggcccagccgaaccgacgtctcctcgattaccaag
gctctggagcagaataagcagcgtacacaaaagcagctgtcgcagaatgctctagcgccg
accgaacagcctgaagcaccttcagccggccggatacggagcagtcagtccagtgacggg
ccagacggcagcccaggatccatcaactcgcctactttcagtgcgtcccctgtacagagc
tctgacagcacagctagagagttagagccaggcgctactcccttgtcagcattacccaga
ctcggagaggtcggtcctcaggctgaaggacaggactcgtcttcctcaggcacgcacttt
gacttcacctatcctccggaccatcttcaagaggaggagccagaaacagacaggaatcct
gacggagggacgccgcggccaatcaggagaatggagccgttgtgcacaggagaggtgcag
agtgaggacgatcaggcgtttgaggtggagccagagcaggaccctcctcactggcagacg
ctggtgagcacagaagtcctcgcactgctgtcgccgcacgagatcaagagacaggaagtg
atcaatgagttgttctacacggagcgcgctcacctgcgcatgctgaaggtgctggataac
gtgttctaccagaggatgacccgcgagagcattctgccccccgcggacatcaaaaacatc
ttcaccaacctggaggagatcgtccagctacacgtgtctataaccgagcaaatgacggcc
attcggaagaagtacgagacggcggtcgtggacctcataggagacgatttgctgtcctgg
ttcagcggaacagaagaggagaagatcaagcgggcagtaggaaccttctgcagtaaccag
ccttttgctctggagcttataaagagcaggcagaagaaggatcagcgatttgctgccttt
gtgcaggaggcggagagtaatcgtcagtgtcgaaggctccagctgaaggacatgattcct
gtggagatgcagcgactcactaaatacccacttctgctcgaaaacattgcgaaatacact
gacgacaccgaggagaaaagcaaagtgaagcgagcctgcgaatgctgccgtcagatcctc
aaccacgtcaaccaggaagtaaaagaggctgaaaacaaacagaggttagaggactaccaa
agaagactggatctctcgtcactgaagcagagcgagtaccccatgattgcagagtttaag
aacctcaacttgaccaaacggaaaatggtgcatgagggacccctgtcttggaaagtgaat
aaagacaagactattgagctctacacactcctgctagaagacatcttggtgctgctgcag
aggcaggatgagaagcttatcctgaagtgccacagtaagaatctggcaggcacggccgag
accaaacacatcttcagtccaatcatcaagctcagcaccgtgctggtgcgctctgtagca
acagacaacaaatcgttcttcgttgtgtccatgtccgattacggcgcgcagatctacgag
ctgatggcgcagaccgtgtctgagcagaagacgtggcacgatctcatcgggcaaagagca
gacagtatgaagagcctgcctcagaacgatggggagcgggaagctgacgacgagatgaac
tctggcatgccgaaaatgagcaaagatccagatcgcatctctactggaagcgtccagtct
ccagaaaaagatgctacttcctcaactgagatcatgcagattcctccagcaggaagcaac
ccatttgacaccaagtcagaagatgaggaggaggcagaaggtgagcatttgccgcaagtt
caggatgaagttcaggatgaagttcaggatgaagttcaggatgaagcggaggaggacgag
gaagaggccttcctagaccccgagctcgcagacagacttccgttcttgaagcagcgctcg
aggcacgccatcgctgtagaggagaaggacttggatacctttgacctgcctccactgatg
gcagacgaggcgcttcgaaccctggctgctctgcggcagctcctgatcaatcacatggac
ggtcaggaggatgtggacagggacagagagaggggggaggctcggctgcgtgagctgaag
gcagggtctctgcagggctcggaggaaaacgctgcccctggtggatcagtggagaacggt
gcagagaggaccgagaccgcacacgtcaagtcagagaaccgtctcgagttgccctcagga
gatacaggcttctttgaaacctccgaggactttggcagttacatggtgctggagggttac
ggcggttcgggtgagagcagcactgatgacgacgggcaggtctgcagcaccgagcctgcg
gcagcaggggactctggcattgacctgaagaagctcctgtcttccgtttcctctcagagc
agaggccccaacttcagcagacagatcatgacccacttgcgcctgcttcaggccaacctg
cagcatctgaaggatgtagaatcaaaatataaccaactatgccaaaggcactcagagcaa
gcggctactgaatcagaagaaaacaaagataaaagctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (7)   
   UniProt (1)   
   RefSeq(pep) (6)   
DNA sequence (10)   
   RefSeq(nuc) (6)   
   GenBank (2)   
   EMBL (2)   
Protein domain (7)   
   Pfam (7)   
All databases (62)   

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