KEGG   Ictalurus punctatus (channel catfish): 108260863
Entry
108260863         CDS       T04658                                 
Name
(RefSeq) nuclear valosin-containing protein-like
  KO
K14571  ribosome biogenesis ATPase
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    108260863
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ipu03009]
    108260863
Ribosome biogenesis [BR:ipu03009]
 Eukaryotic type
  Pre-60S particles
   Other pre-60S particles
    108260863
SSDB
Motif
Pfam: AAA Nucleolin_bd AAA_lid_3 RuvB_N AAA_16 AAA_2 AAA_22 AAA_5 AAA_14 AAA_33 TIP49 Zeta_toxin Vps4_C Mg_chelatase RNA_helicase AAA_28 AAA_17 nSTAND3 AAA_18 NACHT TsaE Rad17 ABC_tran AAA_3 Viral_helicase1 IstB_IS21 ATPase AAA_25 Sigma54_activ_2 Cytidylate_kin2 DUF4404
Other DBs
NCBI-GeneID: 108260863
NCBI-ProteinID: XP_017317011
Ensembl: ENSIPUG00000006435
UniProt: W5UJS9
Position
29:complement(6621297..6663383)
AA seq 872 aa
MKNRCSGIDQRLKQRVEQYLKSNNSQYVDVVEMAADLQRQYRLDYGRRNRTAFRIQVEKV
HKIICNDSGLSALEDKHLAKRARRSKEDDGEDSSVLSDSTDSEADLSENENTNHMNNSLM
SLYCKGNPKNGTPSREQDASSPNPACQKGSSAEGSGSSCTLYHSTTTVSSGGWFIDKTGR
KDRENMLIDLCEESASPAVKKDTGLSMLEPEKKPKKSKKKEKRKPQSEGESKDADIEESI
MSKKARPKPPELQHSTVKFEDVGGNEETLTDLCKLLIHMRHPDVYQQLGVVPPRGFLLHG
PPGCGKTLLAQAVAGEMELPMLKVSAPELVSGISGDSEQKLRELFEQAVSGAPCILFIDE
IDAITPKREVASKDMERRIVAQLLTCMDDLNSLRIPAQVLVIGATNRPDSLDPALRRAGR
FDREICLGIPDEGARLKILNTLCRKLKLPADFDFAQLARLTPGYVGADLMALCREAAMTA
VNRVLLQQLEAGHMCQNTDVQNDDSAKSQDMSISSDVVEESGQASDDLSAPQGELQQLLS
LLRNSKSLSKEQLADLCIVMDDFRESLARVQPSAKREGFATVPDVTWDDIGALQDIREEL
TMAILAPVRSPEEFKALGLSAPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN
MYVGESERAVRQVFQRGRNSAPCVIFFDEIDALCPRRSGHESGATVRVVNQLLTEMDGLE
TRRQVFIMAATNRPDIIDPAVLRPGRLDKTLYVGLPPPEDRHAILLTITKGGTKPCLELD
VNLEEIAHDKRCDCFTGADLSALVREACVNALRAHLYSQTALAHTGHTFSSSSVKGIRVS
RQNFEEALKKVRPSVSKKDQLMYEKLRESLTR
NT seq 2619 nt   +upstreamnt  +downstreamnt
atgaagaacagatgtagtggtatagaccagcgactcaaacagagagttgaacagtacctg
aaatccaacaacagtcagtatgttgatgttgttgaaatggccgcagaccttcagcgacag
tacaggctagattatggcagaaggaacagaacagcttttaggatacaagtggaaaaagtg
cacaagataatatgtaatgattctgggctctcagcactagaagacaaacacttggctaaa
agagcaagacgcagtaaagaggatgatggtgaggacagcagtgtgctgagtgacagcaca
gacagcgaggcagatttatctgaaaatgagaacactaatcacatgaacaactcgctgatg
tccctgtattgcaaggggaatcccaagaatggaaccccttcaagggagcaggatgccagt
agcccaaatccagcctgtcagaagggttcatcagctgagggcagcggtagcagttgtacc
ctttatcactccaccaccactgtgtcttcaggtggctggttcattgataagacaggaaga
aaagatcgggagaacatgctgatcgacctgtgtgaggagtcagccagccctgctgtcaaa
aaagacactggtttgtcaatgctggagcctgaaaagaagccaaagaagagcaagaagaaa
gaaaagagaaaaccccagagtgaaggagaaagtaaagacgcagacattgaggaaagcata
atgtcaaaaaaagcccggcccaaacctcccgaacttcaacattccactgtgaagtttgaa
gacgttggtggtaatgaagaaactctgacggatttgtgtaaattgctcatccatatgcgt
catcctgatgtgtaccagcagctaggagtagtgcctccacgaggtttccttcttcatggg
ccgcctggttgtgggaaaaccctccttgcccaagctgttgctggggaaatggagttgccc
atgttgaaggtctctgctccagagctggtgtcaggcatttcaggggactcggagcagaaa
ctacgtgagctgtttgagcaagctgtgagcggtgctccctgcattctattcattgatgag
attgatgccatcactccaaagagggaggtggcctccaaggacatggagagacggattgtt
gctcagttactcacctgcatggatgacttgaattccttacgtataccagcacaggtcttg
gttattggagccaccaaccggcctgattctttagatcctgcgttgagaagagcaggacgt
tttgacagagaaatctgtctgggcattccagatgaaggagcacgtctgaaaattcttaat
actctttgtcggaagcttaagttgccagcagattttgactttgcacagctggcacgtctc
acacctgggtatgttggtgcggatctgatggcactgtgccgtgaggcagccatgactgct
gttaaccgggtcctgctgcagcagcttgaggctggccacatgtgtcagaacactgatgtc
cagaatgatgacagtgcaaagtcccaagatatgagcatatctagtgatgtggtagaagag
agtggacaggcttctgatgatttaagtgcaccgcagggggagctacaacagctgctttct
ctgctgaggaacagcaagtctctgagcaaggaacagcttgctgatctctgcatcgtcatg
gatgacttcagggagtcactggcacgagtccaaccatctgccaagcgtgaaggcttcgcc
acagtgcctgatgtcacctgggatgatatcggtgcactgcaagacattcgcgaggaactc
actatggccatcttggctcctgtacgtagtccagaggagttcaaagctctgggtttgagt
gcccctgcaggagtgctgcttgctggacctccaggctgtggaaagacccttcttgcaaaa
gctgttgccaatgagtctggtttaaactttatatccgtcaagggccccgagctactgaat
atgtatgttggtgaaagtgagcgtgcagttcgccaggtgttccagagaggacgaaactcg
gccccgtgtgtgatctttttcgatgagattgatgccctttgccctcgacgttctggccat
gagtctggagccactgtgcgtgtagtgaaccagttgcttactgagatggacgggttggag
acacgccgccaggttttcatcatggctgccaccaaccggccagacatcattgatccagca
gtccttcgacctggccgtttggacaaaacattgtacgttggtttgcctccgccagaagac
agacatgccatattgctcactattactaagggaggaactaagccttgtctggagttagat
gtgaacttagaggaaattgcccatgacaaacggtgtgactgtttcactggggcagacttg
tctgcactagttagagaggcttgcgttaatgctttaagagcccacctctactctcaaaca
gctcttgcccacacagggcacacattctcctccagctctgttaaaggcatacgggtaagc
aggcagaattttgaagaggctttgaagaaggtgcggccgtccgtgtccaaaaaggaccag
ctcatgtatgagaaactgcgagaatctctcaccagatag

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