KEGG   Ictalurus punctatus (channel catfish): 108266015
Entry
108266015         CDS       T04658                                 
Name
(RefSeq) DNA excision repair protein ERCC-8
  KO
K10570  DNA excision repair protein ERCC-8
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03420  Nucleotide excision repair
ipu04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    108266015
  09124 Replication and repair
   03420 Nucleotide excision repair
    108266015
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ipu04121]
    108266015
   03400 DNA repair and recombination proteins [BR:ipu03400]
    108266015
Ubiquitin system [BR:ipu04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     108266015
DNA repair and recombination proteins [BR:ipu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      108266015
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 NBCH_WD40 Nup160 Ge1_WD40 Nucleoporin_N
Other DBs
NCBI-GeneID: 108266015
NCBI-ProteinID: XP_017324438
Ensembl: ENSIPUG00000008060
UniProt: W5U7U7
Position
5:27897327..27908319
AA seq 397 aa
MLSFLTARQTGLDDPVRLRRAESTRRVLSLELNHDRDVERIHGNGVNCIDIEVIEGRYML
SGGSDGVIVIYDLENCSKKSHYTCKAVCTVGRSNCHVHKFSVETVQWYPYDTGIFVSSSF
DKSMKVWDTETLKPADVFEFDGNVYCHHMSPIARKHNLIAVGTKDPKVQLCDLKSGSRIH
ILQGHRGEILSVQWSPRYEHILATASADGRVRMWDVRRAAGSLFTLDQYNGDKSKASSEA
VNTAHNGRVNGLRFTDDGLYLLTTGTDDRMRLWNSATGHNTLVNYGKVVNESRKGVKFTV
SRGCSPEFAFVPCGSSVTVYSLYTGKLVTTLRGHYNNVDCCEFHPDYQELYSGGKDCNIL
AWVPVLRQPDVEDEGKRGGDQAAVNPAFEDAWSSDED
NT seq 1194 nt   +upstreamnt  +downstreamnt
atgttgagctttcttacagccagacaaactggtttggacgatcctgtacgcttgagacga
gcagaatcaacaagaagggtgctgagtttggagttgaatcatgatagagatgtggaacga
attcatgggaatggagtgaactgtattgatattgaagtgattgaagggagatatatgtta
tcagggggttccgatggtgtaattgtgatctacgacctggaaaactgcagcaagaagtca
cattacacttgtaaagcagtttgtactgtaggcaggtcaaattgtcatgtgcacaagttc
agtgtggagacagttcagtggtatccttatgacactgggatatttgtatccagctcattt
gacaaaagcatgaaagtttgggacacagaaacactcaagccagctgatgtgtttgagttt
gatgggaatgtctactgccaccacatgtctcctattgccaggaaacataatctcatagca
gttggaaccaaagacccaaaagttcagctgtgtgatctgaagtctggttctcgcatccac
atcctacagggtcacagaggagagattctctctgtccagtggtccccgcgctatgagcac
atcctggccactgctagcgctgatggcagggtgcgtatgtgggacgtccggcgagctgct
ggaagcctctttactttagatcagtacaatggggacaagtctaaagcgtcttctgaagca
gtgaacacggcccataatggacgtgtgaacggcttgcgcttcactgatgatggcctttat
ctcctgaccactggcacagatgaccgtatgcgcctgtggaacagtgccacaggccacaac
acgctggtcaactatggaaaggtggttaatgaaagccggaaaggagtgaagttcactgtg
tcgagaggctgcagcccagagtttgcatttgtgccatgtggcagctccgttacagtgtac
agcctttacacaggaaagctagtgacgacattaagggggcattacaataatgtggactgc
tgcgagttccacccggactatcaggagctctacagtggtgggaaggactgtaacatcttg
gcgtgggttcctgtgctgcgtcaacctgatgtcgaagacgagggaaaaaggggtggagac
caagctgcagtaaatcctgcatttgaagatgcctggagcagtgatgaagactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (34)   

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