KEGG   Ictalurus punctatus (channel catfish): 108273654
Entry
108273654         CDS       T04658                                 
Name
(RefSeq) mismatch repair endonuclease PMS2
  KO
K10858  DNA mismatch repair protein PMS2
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03430  Mismatch repair
ipu03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    108273654
   03460 Fanconi anemia pathway
    108273654
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ipu03400]
    108273654
DNA repair and recombination proteins [BR:ipu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    MutL homologs
     108273654
SSDB
Motif
Pfam: MutL_C DNA_mis_repair HATPase_c_3 HATPase_c
Other DBs
NCBI-GeneID: 108273654
NCBI-ProteinID: XP_017338511
Ensembl: ENSIPUG00000003050
UniProt: A0A2D0S7V3
Position
13:11983872..11997786
AA seq 857 aa
MTESCSEPARAIRAIDKHSVHQICSGQVVLTLATAVKELVENSIDAGATQVDIKLKENGT
ELVEVSDNGRGVQEENFEGLTLKHHTSKLRDFSDLIHVETFGFRGEALSSLCALSDLSVV
TCHESSHVGTRLVFDHNGRLVQRAPHPRQQGTTVSLQQLFSTLPVRHKEFQRNIKKEFSK
MVHVLQSYCIISTGVRITCINQLGQGKRNTVVCTSGSHSLRDNIGALFGPKQLQSLLPFQ
QISPNELVKEDYGLTGEELPKDLFTISGYVSQADHGVGRSATDRQFFFINKRPCDPSKVS
KLVNEVYHMFNRHQYPFVALNISVASECVDVNVTPDKRQVFLQEEKVLLAILKSSLIAMY
ETGVNKISPNLTPLITGISSRNSDSAVSSEGPRKASLSGLTSEVDSETLTQTPKTSFNLA
GLKAAFSKQKFTEIGTKTSNNKAVHDVPAPKKMQSFFHCSGKTNYSRSPDTASEKAASSL
KAFKSDLTKHEHKLDMEADSGMSEQGSITETPETVCGSSSEFDSPDLVLEEPGIKTEPYS
ESVDEVHDVLETSEQETVSVIDPERISSPKAKKYRWDHRLSEQPQLPSSSASGTSCGLFD
KPVRVQKKTVPLQFSMTELIKRMEKLKTQQRSQNDQEPKYRLFRAKINPGENQSAEDELK
KEISKDMFKEMEVIGQFNLGFIVTKLKSDLFIIDQHATDEKYNFEMLQQHTVLNGQRLII
PQNLHLPATSETILIENLEIFKKNGFDFLIDENAPVMERVKLISVPTSKNWTFGPGDIEE
LIFMLSDSPGVMCRPSRVRQMFASRACRKSVMIGTALNTSEMKKLVVHMGEIEQPWNCPH
GRPTMRHLLNLDVISQD
NT seq 2574 nt   +upstreamnt  +downstreamnt
atgacagagtcttgctctgagccagccagagccatcagggccattgataaacactcagtg
catcagatctgctctggacaggtggtgttgactttggcaacagctgtgaaagagctggta
gagaacagcatcgacgcgggcgctacacaagttgacatcaagctcaaagagaacgggaca
gagctggtggaagtctctgataacggacgaggtgtgcaggaggagaactttgaaggccta
actttaaagcaccacacatcgaaactgagagatttctccgacttaattcatgttgagaca
tttggcttccgtggtgaagccctgagctcgctgtgtgctctcagtgacctcagcgtggtg
acctgtcatgaaagtagccatgtgggcactcggctcgtctttgaccacaatggccgtctt
gtccagcgagccccccatccccgacagcaggggaccaccgtcagccttcagcagctcttc
tccaccctaccagttcgtcacaaagagtttcagcgcaacatcaaaaaggaattttctaag
atggtccatgtcctgcagtcatactgcatcatctctactggtgtgcgcatcacatgcatt
aatcagcttggccaaggcaagcgtaacacagtagtgtgcaccagcgggagccacagcttg
agggacaacattggagcgctgtttgggccgaaacagctccagagtctacttccttttcag
caaatatctcccaatgagcttgttaaagaggattatggcttaactggcgaagaacttcct
aaagaccttttcacgatctctggttacgtatcacaagctgatcacggtgtgggacgaagt
gcaactgaccggcagtttttctttattaacaaaaggccctgtgatccatccaaggtttcc
aagcttgtaaatgaagtctaccacatgttcaaccgtcatcagtacccatttgttgctcta
aacatttctgttgcttcagaatgcgtcgacgtcaatgtcacacctgataagcgtcaggta
tttctgcaggaggagaaggtattgcttgccatcctgaagagctctctcatcgccatgtat
gagactggagtcaataaaatcagtcccaatctcacaccactaatcacaggcatttcttcc
agaaatagtgattctgctgttagttcagaaggtcctcgaaaagcttcgctgtccggattg
acttcagaagttgattcagagactttgacacagaccccaaagacatcttttaacttagct
ggactaaaggcagcattttcaaaacagaagtttactgaaattgggacgaagacctctaac
aataaagctgtgcatgatgttccagctccaaaaaagatgcagtcttttttccattgctca
ggaaagactaactacagcagatcaccagatactgcttcagaaaaagcagcttcatcactg
aaagcttttaaatcagacttaaccaagcatgagcacaagttggacatggaggcagattca
ggtatgtctgagcaaggctccatcacagaaaccccagagactgtgtgtggaagcagttct
gagtttgactctccagacttggttttagaggaacctggcattaaaaccgagccttacagt
gagtctgtagacgaggtgcatgatgttttagaaacgtcagagcaagagacggtgtctgtt
attgaccctgaaagaatttctagtcccaaggcaaaaaaatataggtgggatcataggtta
tcagaacagccccaactgccatcctcaagtgcgagcggtacttcctgtggactgttcgac
aaaccagtcagagtgcagaagaaaaccgtgcctttgcagttttcaatgactgagctgatt
aaaaggatggagaaactaaagacccagcaaagaagccagaatgatcaggagccaaaatat
agactcttcagggcaaagattaaccctggtgaaaaccagagtgcagaggatgagctgaag
aaagagataagcaaggacatgtttaaggagatggaggtcattggtcagttcaacctgggt
tttatcgttaccaagttaaagtcagatctttttattatcgaccagcacgccacggacgaa
aaatacaactttgagatgctacaacagcatactgtcctaaatggacagagacttataatt
ccacagaacctccaccttcctgctacaagtgaaacgatactgattgaaaatctcgaaatc
ttcaagaaaaatggttttgacttcctcattgatgagaatgcaccagtcatggagagagtg
aagctgatatctgtacctacaagtaagaactggacttttggcccaggtgacattgaggag
ctcatcttcatgcttagtgacagtcctggagtcatgtgcaggccttctcgagtcaggcag
atgtttgcatcgagagcttgccgcaaatcagtaatgattgggactgcgctgaataccagt
gagatgaagaagctcgtggtccacatgggggaaatcgagcagccttggaactgtcctcac
ggcaggccgaccatgaggcacctgctcaaccttgatgtcatttctcaggactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (39)   

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