KEGG   Ictalurus punctatus (channel catfish): 108273926
Entry
108273926         CDS       T04658                                 
Name
(RefSeq) protein PAT1 homolog 2
  KO
K24823  protein PAT1 homolog 2
Organism
ipu  Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ipu03019]
    108273926
Messenger RNA biogenesis [BR:ipu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     108273926
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 108273926
NCBI-ProteinID: XP_017339113
Ensembl: ENSIPUG00000020692
UniProt: A0A2D0S8P5
Position
13:complement(2162714..2170819)
AA seq 677 aa
MNDSENPEEKGDSVPEASWPENGDQWSDGGEMEESGLIQEMVEEDEEIDLYNEETFGLDL
NAEDLEADPVDLLLMEGNQPASPHPPSPHKPSPPSPKVQIKPQVPTRPSEKSRSRWERVG
MGQLLDDPAVMRTVEGPPSLKSLDSAIVDCGRSSGWGDLNANTWMMSSYGPTRQTPLLQD
RAIVRVIDRATRGSMPFTSPTLQSPLQRALPRQAPVCPVMPRSPIRPQSPFSIKQNYNQP
GIYLSPSTPRYHSPKMMPLQFGPNSPRPGPCFSPLLSPLPQRFRFPVLATQLHPQHKRLL
SQRPQGFRRKSKDWDHYAELMSAKEKEWIIKLQMIQLQSENPHQDDYYYQEYYRRLETKL
AEEEMLGDRSKREPPKLTTPYVNKTVSYTPVVHIEGSLGQVAVSTCYSPRRAIDAVHGHT
MEEQNNIRQQKLEVLNTIEKCYITLLGVEEAERMKASISDEEERQRRLTTIQRGVEQISN
QLRHPNSSESAEEFLPCLLVSKGKKLLSRLLPFLSHDASLQVLRAITTHLPALMSRDIDE
ALPVLYPSLRAVIGTLTFSQLVSILRDFTTALPDSKDSRLTLACQNKFGLSLVYALLSQG
ERLLTSDIPMEPSIGDFETWTDTVFHVARQLSRSSLIEPLFLPSNLLTLFCRYLDKRTVQ
QLKNNMESSTGYLAVGS
NT seq 2034 nt   +upstreamnt  +downstreamnt
atgaatgactctgagaacccggaggagaagggtgactctgttcccgaggccagctggcct
gaaaatggagatcagtggagcgatggaggagaaatggaagaatctgggctcattcaagaa
atggtggaggaagatgaggagattgatctgtacaacgaagagaccttcggattagaccta
aatgctgaagatctggaggcggatcctgttgatcttctgttaatggaaggaaaccagccc
gcctcaccccatcctccatcaccacacaagccctctcctcccagccctaaagttcaaatc
aagcctcaggttcccacaagaccgagtgagaagtcccgcagccgatgggagcgagtcggt
atggggcaactgctggatgacccggctgtgatgaggactgtggaaggtccacccagtctc
aagagtttggacagtgctattgtggactgtggacgcagttcaggctggggggatctcaac
gcaaacacgtggatgatgtcatcttatggcccaacgagacaaacgcctctcttacaagac
agagccatcgtgcgagtgattgacagggcgactcgtggcagtatgcccttcacgtctcct
accttgcaatccccgctgcagagggctctccctcggcaggcgcctgtctgtccggtgatg
cctagatctccgatacgccctcaaagtccattctcaattaaacagaattacaaccagcca
ggcatttatctgtcaccctccacgccaagataccactctcccaaaatgatgccgctgcag
tttggaccaaactcaccccgacccggcccctgcttcagccctttactcagtcccctccct
cagagattcaggttcccagtcctggcaacccaactccatccacagcacaagagattgctg
agtcagcgtcctcaaggctttcggagaaagtcaaaggattgggatcattatgctgagctc
atgtcagccaaagagaaggaatggatcattaagttgcagatgatccagctacaaagtgag
aacccccatcaagatgattattattaccaggagtactatcggagactggagaccaaattg
gctgaggaagaaatgctgggtgaccgctccaagagggaaccacccaaactcactacgccg
tacgtcaacaaaactgtatcatacactccagtggttcatatcgagggctctctgggtcaa
gtcgccgtttctacgtgttactcgccacgtcgagccatcgacgctgtgcatgggcacacc
atggaggaacagaacaatatcagacaacagaaactcgaggtgctgaataccattgagaag
tgctacatcactttgttgggggtggaggaagccgagagaatgaaggctagcatttcggat
gaggaggaaaggcagagaaggctgacgaccattcagagaggagtggagcagatcagcaac
cagctacgccaccctaactcttcggagtctgcagaagagttcctaccatgcctcttggtt
tcaaaagggaaaaaactgctgtcaaggctcctcccatttctatcccatgacgcatctttg
caggttctgagagcgatcacgacacacctgccggcgctgatgagccgagacatagatgag
gctcttcctgtcctctacccctcgctccgagctgtgattggcacattgacgttctcccag
ctagtcagcatcctccgggatttcaccacagccttacctgactccaaagactcgcgctta
acactggcctgccaaaataagtttggtctgtcactggtgtacgcgttgctttcacaaggc
gagcgactcctgacctctgacattcccatggagccaagcattggtgatttcgagacatgg
actgacacggttttccatgtggcacggcagctgtcccgctcgtctctcatcgagccactc
ttcttgccctccaatctgctcacgctgttctgtcgctatttggacaaacgcaccgtccag
cagctcaagaacaacatggagtcttcaactggctatctggctgtaggttcctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (29)   

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