KEGG   Ictalurus punctatus (channel catfish): 108275029
Entry
108275029         CDS       T04658                                 
Symbol
abca1b
Name
(RefSeq) phospholipid-transporting ATPase ABCA1b
  KO
K05641  ATP-binding cassette, subfamily A (ABC1), member 1
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu02010  ABC transporters
ipu04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   02010 ABC transporters
    108275029 (abca1b)
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    108275029 (abca1b)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:ipu02000]
    108275029 (abca1b)
Transporters [BR:ipu02000]
 ABC transporters, eukaryotic type
  ABCA (ABC1) subfamily
   ABCA1, 2, 3, 4, 7, 12, 13 subgroups
    108275029 (abca1b)
SSDB
Motif
Pfam: ABC_tran ABC2_membrane_3 AAA_21 SRP54 AAA_23
Other DBs
NCBI-GeneID: 108275029
NCBI-ProteinID: XP_017341058
Ensembl: ENSIPUG00000006410
UniProt: A0A2D0SEA5
Position
14:10632375..10667201
AA seq 2283 aa
MSVSTQLGLLLWKNFTCRRRQTFQLLIEIVWPLFIFFILIAVRLSYPPYEQHECHFPNKA
MPSAGTLPWIQGIVCNANNPCFRHPTPGESPGVVGNFNDSIISRLFSDAKKILLYSQNDR
SLDGFKELINAVKEMQNNTSGFKLKDFLNDNETLSTFLMQNASLTDNVVQEILMAEVNLE
KVLTRGYGVHLRTMCNTSTLEQFVTFPNRKVADLTHNIICSSSQGWLNQAEEHFLANMDF
FRPLRSDIRPERNDTRQVAKITDNLLESLGSVAVELASMRSWSDLRNEILFLTQNATGSP
SQMYQAVSRIVCGHPEGGGLKIKSLNWYEDSNFKAMFGNYNSSDEEPVSVYDNTSTPYCN
NLMKNLETSPISRMIWRALKPLLMGKILYTPHTPATQKIIQEVNRTFQELGILRDLGGMW
EEARPKVWNFMENSEEVDLVRMLLQNNVTAYFFSAKLSGSQWSVQDLSSFLTKHSKDTRP
PGTAFTWRNVFNETDQAIMSISRFMECVNLDKLEPVSTEEKLVNESLGLLDNRKFWAGIV
FPDIDLNSSELPPHVNYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDLRYVWGGFSYLQ
DVIEQSIIRAVTGTKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAIIIK
SVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLMSAGLLVFALKMGNLLPYSDPGV
VFLFLGSFAVVTIMQCFLISTAFSRANLAAACGGIIYFTLYLPYVLCVAWEDYVGLPTKV
IASILSPVAFGFGCEYFALFEEQGVGIQWSNLISSPMEGDDYSLTTAIILMYFDAFLYGV
MTWYIEAVFPGQYGIPRPWYFPFTKSYWFGEGEQNQAPTIQGKKANAGAVCIEEEPTHLD
LGVYIKNLVKVYRNGKKLAVDDLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTFGT
AYIMGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEKKVKAEMDQIL
YDTGLPHKRKSKTSELSGGMQRKLSVALAFVGDSKVVILDEPTAGVDPYARRGIWDLLLK
YRAGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTHLGTGYYLTLVKKEPEA
SLSSSRNSTTTESYIKKDEEDTESSSDAGLGSDQESDAATAIGTSWTDSPVVPADISLIS
GLILKHVPNARMVEDLGHEITYILPYESAKDGAFVDLLHDLDDHLADLGISSYGVSDTTL
EEIFLKVAEDSGVDTEMMSDGTLPIRRRRRHAFGADHQSCLKPVTEDDNFDCNESDADPE
SRETDYLSSTDGKGSYQIQGWTLKRQQFVALLWKRFLYARRSRKGFFAQIVLPAVFVCIA
LVFSLIVPPFGKYPSLALQPWMYEDQVTFISNDAPKDASTQKLLSALTDDPGFGTRCMEG
EPIPNAPCTMGDEDWSIPEVTENVWEVFRNENWTMENPSPECECSCNGKKKMLPECPAGA
GGLPPPQIKISDRDTLQNLTGRNISDYLVKTYAEIIGKSLKNKVWVNEFRYGGFSLGARS
TQVLPPAEEIDDAISRVREIFQLKKNSGTAADRFLNSLSAFINGLDTKNNVKIWFNNKGW
HSIGSFLNVMNNGILRANLPPGKDPRKYGITAYNHPLNLTKEQISQVALVTTSVDVLVSI
CVIFAMSFVPASFVVFLIQERVNKAKHMQFISGVQPYLYWLANFIWDMCNYIVPATLVVI
IFVCFQQKAYVSSTNLPVLALLLLLYGWSITPLMYPASFLFQIPSTAYVVLTSVNILIGI
NGSVSTFVLELFGGDKIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADALERFGENR
FRSPLEWDMVGKNLFAMAVEGVVFFIITVLIQYRFFIKPRALRPKLSPIGEEDEDVARER
QRIISGAGQGDILELRQLTKVYERKKKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKML
TGDSAVTSGEAFLARKSILREIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEG
EVCEVAEWGIRKLGLIKYADRAAGSYSGGNMRKLSTAMALIGGPPVVFLDEPTTGMDPKA
RRALWNCIHSIIKAGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGY
TIILRVAGPEPDLQPVMKFIEIELPGSILKEKHRNMLQYQLPSSLSSLAHIFSILAKHKD
FLQIEDYSVSQTTLDQVFVNFAKDQSDDHCDHSIRRKEAIVNIPLLSLPATLKDEENHKE
SFV
NT seq 6852 nt   +upstreamnt  +downstreamnt
atgtctgtctccactcagctgggcctgctgctgtggaagaacttcacttgtaggagacga
caaacgttccagctgcttattgagattgtgtggcccctcttcatcttcttcatcttgatt
gctgtgagattgagctaccccccatatgagcaacatgagtgtcactttcccaacaaagcc
atgccctcagcaggcaccctgccatggatccagggcattgtgtgtaatgccaataaccca
tgtttccgtcaccccaccccaggagaatcgcctggagtagtcggcaacttcaacgattcc
ataatatcacggcttttttcggatgccaagaaaatcctactgtacagtcaaaatgacaga
agtcttgatggatttaaagagttaatcaatgcagtaaaagaaatgcagaacaacacttca
ggtttcaagcttaaagacttcctaaatgacaacgagaccctgtctactttcctcatgcaa
aatgcttccctcacagataatgttgtacaggagattctgatggcagaagtgaacctggaa
aaggtgctaacacgaggatatggggtacatctgagaaccatgtgtaacacgtccaccctg
gagcaattcgtgactttcccaaacaggaaagtagcagacctcacccacaacattatctgc
agctcatctcagggctggctgaatcaagctgaggaacacttcctggccaatatggacttc
tttagacctttaaggtcagacataagacctgagagaaatgacaccaggcaagttgccaaa
atcacagacaacctcttggaaagcctgggttctgtagctgtggagttggccagcatgcgg
agctggagtgacctgcgcaatgagatcctcttcctgacccagaatgccactggttcaccc
agtcagatgtaccaggctgtttcaagaatagtgtgtggacaccctgaaggtggtggcctc
aaaatcaagtctcttaactggtatgaggacagcaacttcaaagcaatgtttggcaactac
aacagcagcgatgaggaacctgtttcagtctacgacaatacgagcactccctactgtaac
aatctaatgaagaaccttgagactagccccatctctcggatgatctggagagcactgaag
cctctgctcatggggaagattctgtacacacctcacacccctgccacacaaaagatcatc
caagaggtcaacaggacatttcaggagctgggaattctccgagatctgggtgggatgtgg
gaagaggccaggcccaaggtctggaacttcatggagaacagtgaagaggtggacctagtg
cggatgttactacagaacaatgttacagcctatttcttcagtgccaagctgagtggtagt
cagtggagtgtgcaggatcttagcagtttcctgaccaagcattccaaggacactcgtcca
cctggtacagcattcacatggagaaatgtcttcaatgaaaccgatcaagctattatgagc
atatcccgcttcatggagtgtgtgaatctggataaattagagcctgtgagcactgaggag
aagttagtgaatgaatctcttggtctgctagataacagaaagttctgggctggaattgtg
ttccccgatattgatctaaacagctcagagcttcctccccatgtcaactacaaaatccgc
atggacattgacaatgtggagcgcaccaacaagatcaaggatgcgtactgggaccctggc
cccagagctgacccatttgaggacttgcggtacgtttggggcggtttctcctacctccag
gatgttatagaacagagcatcatcagagctgtaacgggaactaaagagaagactggagtc
tacatccagcagatgccttacccatgctatgtcgacgatattttcctgcgtgtgatgagt
cgctccatgcccctcttcatgaccctagcctggatgtactctgtggctattataataaag
agcgtggtctacgagaaggaggcccgcctcaaggagaccatgaggattatgggattggac
aatggtatcctatggttcagctggtttatcagcagtctcatcccgcttctcatgagtgct
ggactactagtgtttgcgcttaagatggggaacctgcttccctacagtgaccctggtgtg
gtcttcctctttttgggctccttcgctgtggtcactatcatgcagtgtttcctaatcagc
acagcattttcccgggcaaacctggctgcagcatgcggtggaataatctacttcacactc
tatctgccctacgtgttgtgtgtggcctgggaggattacgtgggtcttcccactaaagtt
attgctagtatactctctccagtggcctttgggttcggctgtgagtactttgccctcttt
gaagagcagggagtggggatccagtggagcaacctcatctctagcccaatggaaggggat
gactacagtctcactactgccattatcctgatgtactttgacgccttcctctatggtgtc
atgacctggtacattgaggctgtgtttcctggtcagtatggcattcccagaccatggtac
ttcccattcaccaagtcctactggtttggagaaggagagcaaaatcaggcacccacaata
cagggcaagaaggcaaatgcaggagctgtgtgcattgaggaagagcccactcatcttgac
ctgggggtgtatattaagaacttggtgaaggtctatcggaatggcaaaaagcttgctgtg
gacgacctgacactgggattctacgagggtcagattacatcctttctggggcacaacgga
gcaggaaaaactaccaccatgtccatcctgactggtttgtttccaccaacatttggtaca
gcgtacatcatgggcaaagacatccggtcagagctaagtgctatccgtcagagccttgga
gtttgccctcagcacaacgtcctcttcagcatgctgacggtagaggagcacatctggttc
tatgcacgacttaaaggcctttctgaaaagaaggtgaaggccgagatggatcagatcttg
tatgatactggtctgccacacaaacgcaagtccaaaaccagtgagctctctggtggcatg
cagaggaaactttcagtggcccttgcatttgttggagactcaaaggttgtcattctggat
gagccaactgctggggtggacccttatgctcgcaggggcatttgggacctcctgctgaaa
tatcgtgcaggccgaaccatcatcctttccactcatcacatggacgaagcagacatcttg
ggtgatcgtattgccatcatctctcatgggaagctatgctgcgtgggctcctctctcttc
ctaaaaactcacctgggaactggatactatttgacactggtaaagaaggaaccagaagct
tctctgagttccagcagaaactccaccaccactgagtcttatatcaagaaggatgaagaa
gacacggagagcagttcagatgctggtttgggcagcgaccaagagagcgatgctgccaca
gctattggtacctcgtggactgattcacctgttgttcctgcagacatctctctaatctca
ggtctgatccttaagcacgtccctaacgcacgcatggtggaggatctgggacatgagatc
acctacatcctgccttatgaatcggctaaagatggtgcctttgttgatctcttacacgat
ttggatgaccaccttgctgatttgggcatctcgagttatggtgtttcagacaccacactt
gaagagattttcctgaaagtggcagaggacagtggggttgatactgaaatgatgtcagat
ggcacactccctatacgcaggcgcagacgacatgcttttggagctgatcaccagagctgc
cttaaacccgtgactgaggatgacaactttgactgcaacgaatctgatgctgacccagag
tccagagaaactgattacttaagcagcactgatggtaaaggttcataccaaatccagggc
tggaccctgaagagacagcagtttgtggccttgttgtggaaaagattcctgtatgctcgt
cgttccaggaaaggcttctttgcccagatcgttctgcctgctgtatttgtgtgcatcgcc
ctggtattcagtcttattgtccccccctttggaaaataccccagtcttgccctgcagcca
tggatgtatgaggatcaagttacctttatcagcaacgatgcacctaaagatgccagcact
caaaagttactctccgcactaacagacgaccctggctttggaacacgctgcatggaagga
gaaccaataccaaatgctccctgtacaatgggtgatgaggattggtccataccagaggtc
acagaaaatgtgtgggaggtgttcaggaatgaaaactggaccatggaaaacccatcgcca
gagtgtgagtgcagctgtaatggcaagaagaagatgctcccagaatgccctgctggtgct
ggaggccttccacctccgcagataaagatcagtgacagggacacacttcaaaacctgact
ggaagaaacatctcagactacttggtgaagacttatgcggaaattattggcaaaagtttg
aagaacaaggtctgggtgaatgagttcagatatggtgggttctcactgggtgccagaagc
acgcaggttctcccgcctgctgaggagattgacgatgccatttctcgagtgagggaaata
ttccaactgaagaagaactcagggacagcagctgatcgctttctaaacagtctctctgct
ttcatcaatggcctagacaccaaaaataatgtgaagatctggttcaataacaagggctgg
cacagcatcggttccttcctcaacgtgatgaacaatggtattttgcgggccaatttgcct
ccagggaaggacccaagaaaatatggcatcacagcctacaatcaccctctgaaccttacc
aaagagcagatctcccaggttgcactggtgacaacctcagtggacgtgctggtgtctata
tgcgttatcttcgctatgtcatttgttcctgctagctttgtcgtctttctcattcaagaa
cgtgtgaacaaggccaagcatatgcagttcatcagtggagtacagccatatctttactgg
ctggccaattttatctgggatatgtgcaattacatcgtcccggcaaccctggtcgtaatc
atctttgtgtgcttccaacaaaaagcctacgtgtcttccaccaatctgccagtactcgcc
ctgttgctacttctgtatggatggtctatcacacctctgatgtacccagcttccttcctg
ttccagatccccagcactgcgtacgttgtccttaccagcgtcaacatactgattgggatc
aacggcagtgtgtccacttttgttctggagttgtttggtggcgataaaattggtggcatc
aatgatatcctgaagaacgtgctcttgatcttccctcacttctgtctaggacgaggcctg
attgacatggtgaagaatcaggccatggctgatgcactggagagatttggagagaaccgt
ttccgctccccattggaatgggacatggtgggtaagaacctgtttgccatggcagtggaa
ggagtggtcttctttattattactgtcctcatccagtaccgcttctttatcaaacccaga
gctcttcgccctaagctgagtcctattggagaggaagatgaggatgtggctagggaacgg
cagaggatcatcagtggagcaggacaaggagacatccttgagctccgacagctcacgaag
gtgtatgagaggaagaagaaacctgctgtggataggctttgtgtgggaattcctccagga
gagtgctttggtctgcttggagtgaatggagctggaaagacaagtacctttaaaatgctg
acaggagactctgcagtcaccagtggggaagcattcctagctaggaagagtatactcagg
gaaatagatgaggtacatcagaacatgggctactgccctcagtttgatgccatcaacgac
ctgctgacaggcagagagcacctggagttctatgccatcctacgtggtgttccagagggg
gaagtgtgtgaggtggctgagtggggcatccgcaagctgggcctaataaaatatgccgat
agagcagctggaagctacagcgggggcaacatgcgcaaactctctacagccatggccctc
atcggaggcccaccagtggtctttctggacgaacccaccactggtatggaccccaaggcc
cgcagagctctgtggaactgcatccacagcatcatcaaggcggggcgctccgtcgtgctg
acttcacacagcatggaagagtgtgaggccctgtgcaccagaatggccatcatggtaaat
ggccgatttaggtgtctaggaagtgtccagcatctaaaaaacaggtttggtgatggatac
accatcatcctgagggtggcaggacctgaaccagacctgcagcccgtaatgaagtttatt
gagatcgagctgcctggcagtatactgaaggagaaacacagaaacatgctgcagtaccag
ctgccctcatccctgtcttctctcgctcacatcttcagcattcttgcaaagcacaaagat
tttctccagatagaggattactctgtttcccagaccacactggaccaggtgtttgttaac
tttgccaaggatcaaagtgacgatcactgtgaccactccatacggcgtaaagaggcaatc
gtaaacattcctctgctcagcctgccagcaactttaaaggatgaagagaaccacaaggag
agcttcgtgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (41)   

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