KEGG   Ictalurus punctatus (channel catfish): 108280294
Entry
108280294         CDS       T04658                                 
Name
(RefSeq) 5'-3' exoribonuclease 1
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03008  Ribosome biogenesis in eukaryotes
ipu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    108280294
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108280294
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ipu03019]
    108280294
   03009 Ribosome biogenesis [BR:ipu03009]
    108280294
   03016 Transfer RNA biogenesis [BR:ipu03016]
    108280294
   03036 Chromosome and associated proteins [BR:ipu03036]
    108280294
Messenger RNA biogenesis [BR:ipu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     108280294
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     108280294
Ribosome biogenesis [BR:ipu03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    108280294
Transfer RNA biogenesis [BR:ipu03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    108280294
Chromosome and associated proteins [BR:ipu03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    108280294
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D2_D3 XRN1_D1 SH3_12 Dicer_dimer
Other DBs
NCBI-GeneID: 108280294
NCBI-ProteinID: XP_053529543
Ensembl: ENSIPUG00000015229
UniProt: A0A9F7R3R7
Position
20:complement(24344905..24369391)
AA seq 1665 aa
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRITEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKALEKGE
VLPTEARFDSNCITPGTEFMARLHEQLKYFVQKKLSTDRMWQGVRVYLSGHETPGEGEHK
IMEFIRSELAKPGHDPNTRHCLYGLDADLIMLGLTSHEPHFSLLREEVRFGGKKNQKRIT
APEETTFHLLHLSLMREYIDYEFSPLRERISFPYDVERIIDDWILMGFLVGNDFIPHLPH
LHINQDALPLLYRTYITVLPTLGGYLNENGHLNLAHFEKYLEKLAEFDREHFSEVFVDLK
WFESKVGNKYVNEAAGLAAEEEQGRQGRRNKPFKDSLSLAALDGDKDLPCSTGRGGAEED
GEDEDMFETEFRQYKRTYYMTKMDVEVVSDDFLAGQARCYVEGIQWILHYYYHGVQSWSW
YYPYHYAPFLSDVRNIAHLTLTFDLGKPFMPFEQLLGVLPSASKELLPECYQHLMTSPSS
PIIEYYPVDFRTDLNGKQQEWEAVVLIPFIDEERLLAAMALYTDCLSKSERARNRHTECA
VYYYDKELDFTLASPLPEVFPNVTHCHARSMPVPMDAWRVSLDGVGRRIDRSALYFCGFP
TLQHIQHKFYKKKSGVVVFQQSSRGENMMLEILAGQQGEPVLEDVAALVLGKSVFVNWPH
LEEACVVAVSDGEAKFFLEEAGGVLKPYEDTPPPVKVVYLSDKEQKDWVKEVQGITEHHS
KRKGVVINETSMLLYARLLTGRKYVISPTGQVRLEKQWAKQILPFAYQTIVKDIKAFDSS
SSRFKTLEELFPVSTTVFMVGNPYYGAMGEVQDSSDVLVEGRVRVVFTVPCEPHLDALIQ
NQHKYSIKYSPGYVLASRLGITSYLVSRFSGSIFIGRGSKKNPHGEQRANVGLNLKFNKK
NEEVPGYTKRTEKEWLYSAGVEELLAEYLERFSEVFDYVSRNSHDDLFYEDDIWPGDDEN
GAEKVQEITAWLKMHPVSSSSRASCDLQILDGGIVGKIEEELEKAKAKKSNKKVRVTVKP
HLLFRPLEQQHGVVPDPDADYHLFDRVINVRENFSVPLGLRGTIIGIKGAEREAEVLYEV
LFDEEFAGGLTIRCSPGRGYRLPPCALINLSHGNRQEQNPHKLTAIVKPQPSSSSSSPHT
HKHQLDGLNHSPRSPFKPTQQNSRQGLRADTQGNRITPQKVLNQKTPHKGSANKEEEFSY
VWQSLQFPALPQKPPAHWQNHGQGANIRLLKRNEDLNDTSPQKPSNKVTPEFQDLLANLK
ISKEAEAPMNSPVKEDEGEDEAEKPLSPQSFAMMGTMMLKEMLKIDSSATACPAPDSAPD
PAPLNASQDSSNPGAQQQNRRRCSKKLAARMNSAQGESPAPPLLPCMATELSRVCVGLNM
GPPEFTFLRNRQGLMVCQVKLSNGLLLHGPQSQSETEAKEKAALFTLQRLNSVGSFPLVP
PPLFPGMQAMRPIAPHPQVFTQPAGGLLMPRQGYAPLPWGVQFPPQGQPFFGGTFPGARV
PPPPAHVGSHNQFVPLQVTKKRVTGRKNQEARPDFGNAARPENAEASHLASTETCSAHKT
PPPISTQDPESLHKQPPKQSHAQGSASKRKQRKLAVNFDAAKVTD
NT seq 4998 nt   +upstreamnt  +downstreamnt
atgggggttcctaagttttaccgatggatttcagagcgatatccgtgtctgagtgaagtt
gtgaaagagcaccagatcccggagtttgataatctgtacctggacatgaacgggatcatc
caccagtgctcgcaccccaacgatgaggacgtgcacttccgcatcacagaggagaagatc
ttcgccgacatctttcactacctcgaagtgctctttcgcatcatcaagcccaggaaggtg
ttcttcatggccgtggacggagtcgcaccgagggccaaaatgaaccagcagcgcggcaga
agattcagatcagcgaaggaagcagaggaaaagataaagaaggctctggagaagggcgag
gttttacccaccgaggcccgcttcgactccaactgcatcacgcccggtacggagttcatg
gcgcggcttcacgagcagctgaaatactttgtgcagaaaaagctgtccacagaccgaatg
tggcagggagtgcgggtgtatctgtctggtcacgagactccaggagaaggtgagcacaag
atcatggaattcattcggtccgagctcgccaaaccgggccacgatccgaacacacgacac
tgcctgtacggcctggacgctgacctgataatgctggggctgacgagtcacgagcctcac
ttctctctgctcagagaggaggtacgcttcggggggaaaaagaatcagaagagaataaca
gctccagaggagacaacgttccacctgctccatctttccctcatgagggagtacattgac
tacgagttctctcctctgagggagcggatctccttcccgtatgatgtggagcggattata
gacgactggatcctgatgggcttcctggtgggaaacgacttcatcccccacctgcctcac
ctgcacattaaccaggacgccctgcccctgctctacagaacatacatcactgtcctgccc
acactcgggggatacctgaatgaaaacggtcacctaaacctggctcacttcgagaagtat
ctggagaagctggcagagtttgaccgcgagcacttcagcgaggtgtttgtggacctgaag
tggtttgagagcaaagtggggaacaaatacgtgaacgaagcggccggtctcgccgccgag
gaggagcagggcagacagggcaggcggaacaagccttttaaggactctctcagtctggca
gctttggatggagacaaagacttaccctgttctacaggaagaggaggtgccgaggaggac
ggcgaggacgaggacatgttcgagacggagttccggcagtataagagaacgtactacatg
accaagatggatgtagaggtggtctcagatgatttcttggccggtcaggctcgctgctat
gtggagggaatccagtggatcctgcattattactaccacggagttcagtcctggagctgg
tattacccgtatcactacgcacctttcctctctgatgtgaggaacattgctcacctcaca
ttgacctttgacctgggaaaacccttcatgccctttgaacagctgctgggtgttttacct
tcagctagcaaagagctgctgcctgaatgctaccagcacctgatgacgtctccgagctct
ccgattatcgagtattaccccgtggattttaggaccgacctgaacgggaagcagcaggag
tgggaggccgtcgtcctcatccccttcatcgacgaggaacgactgctggcagccatggcc
ctttacacagactgtctgagtaaatcggagcgagcgaggaacagacacactgagtgtgca
gtgtactactacgacaaagagctcgacttcacactcgcatcaccactgcctgaggttttc
cccaacgtcacacactgccacgccaggtcaatgcctgtgcccatggacgcttggcgagtg
tctctggacggcgttggacgccgaatcgatcggagcgcgctgtatttctgcggctttccc
accttacagcacatccaacataaattctataagaagaagagcggcgtggtcgtgttccag
cagagcagccgaggagaaaacatgatgctggagattttagctggccagcagggggagccg
gttttggaggacgtcgcagcgctcgtgttggggaagtctgtgtttgtgaactggcctcac
ctggaggaggcgtgcgtggtcgccgtgtcggacggagaagcaaagtttttcctggaggag
gccggaggagtgctgaagccgtacgaggacacgcctccgcccgttaaagtggtgtatctg
agcgacaaagagcagaaggactgggttaaagaggtgcagggcatcaccgagcatcacagt
aagcgtaaaggtgtggtgataaacgagacgtcgatgctgctctacgctcggctcctcaca
ggcaggaagtacgtcatctcgccgaccggtcaggtccgtctggagaaacagtgggccaaa
cagatcctgcccttcgcttaccaaaccatcgttaaggacatcaaggccttcgattcgtcc
tcgtctcggttcaaaacgctggaggagcttttccccgtctccaccaccgtgttcatggtg
ggaaacccgtattacggagcgatgggagaggtgcaggattcgagcgacgtcctcgtcgag
ggacgtgtgcgtgtggtgttcactgtgccgtgcgaacctcacctcgatgccttaattcag
aaccagcataaatactccataaagtacagtcccggctacgtcctggcctcacgcctcggc
atcaccagctacctggtctccaggttctccggaagcatcttcatcggaagaggatccaag
aagaatcctcacggtgagcagagagccaacgtgggtctgaatctgaagttcaacaagaag
aacgaggaggttccgggctacaccaagagaacggagaaggagtggctgtactcggccggt
gtggaggagctgctagccgagtatctggagcgcttctccgaggtgttcgactacgtttcc
aggaacagccatgacgatttgttttacgaggacgatatctggccaggagatgacgagaac
ggagctgagaaggttcaggaaatcaccgcctggctgaagatgcatcccgttagctcctcc
tcccgagcgtcatgtgacctccagattctggacggaggcattgtgggcaagattgaggaa
gagctggagaaagctaaggcaaagaagagcaacaagaaagtgcgtgtcacagtgaagcct
cacctgctgttccggcctctggagcagcagcatggtgtagttcctgaccccgatgccgat
tatcacctgtttgaccgcgtcatcaacgtcagggagaatttctctgttccgctcggcctc
agaggaaccatcatcggcatcaaaggagctgagcgagaggctgaagttctgtacgaggtt
ctgtttgatgaggagtttgcaggagggctcaccatcaggtgttctccaggtcgaggttac
agacttcctccttgtgccttaatcaatctgagccacggaaaccgtcaggagcaaaaccct
cacaaactcactgccatcgtcaaaccacagccttcctcctcctcctcctcaccgcacaca
cacaaacaccagctggatggcctgaaccactcgccacgctcgccgtttaaacctacacag
cagaacagcaggcagggtctcagagctgacactcagggaaacagaatcactcctcaaaaa
gtcctgaaccaaaaaacaccacacaagggctcagcgaataaggaggaggagttcagttac
gtgtggcagtctcttcaatttccagcactgcctcagaaaccaccagctcactggcaaaac
catggtcagggcgccaatatcagattactgaagaggaacgaagatttaaatgatacttct
ccacagaagccttccaacaaggtgactccagagtttcaggatctcctcgccaatctgaaa
atctcgaaggaagcggaagctccgatgaactctccggttaaggaggacgagggcgaggac
gaggcggagaagccgctgtctcctcagtccttcgccatgatgggaaccatgatgctgaag
gagatgctgaagattgacagttcggcaaccgcatgccccgcccctgactccgcccctgac
cccgcccctcttaacgcatcacaggattcctccaatcccggagctcagcagcagaacagg
agacgctgctctaaaaaactggcggcgaggatgaactcggctcagggcgagtctcccgct
ccgcctctcctgccctgcatggccacggagctgagccgagtgtgtgtggggctgaacatg
gggccgcccgagttcaccttcctacgcaacagacagggtctgatggtgtgtcaggtgaaa
ctgtctaatggtctcctgcttcacggtcctcagagtcagtctgaaactgaagccaaagag
aaagcagcactgttcactctgcagcgcctgaactcggttggctcgtttcctctcgttcct
cctcctctgttccctggaatgcaagccatgcggccgatcgctcctcatcctcaggtgttc
acgcagccggcaggtggtcttttgatgccgcgtcaaggttacgcccctctgccgtggggg
gtgcagttccccccacaggggcagccgttttttggcgggacgttccccggagcccgagtg
cctccgcccccggcccacgtcggatctcacaaccagttcgtccctctacaggtgactaag
aaacgagttacgggtcggaagaaccaggaagcgaggccggactttgggaacgccgctcga
cccgaaaacgctgaagcctcccaccttgcatctacagagacctgctccgcccacaaaacc
cctccaccaatcagcacgcaggatcccgaaagcctgcacaagcaacctcccaaacagtca
catgcccaaggctccgcctccaaacgcaaacaaaggaagctggcggtgaacttcgatgcc
gccaaagtgacggactga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (91)   
   KEGG ORTHOLOGY (1)   
   RefGene (86)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (110)   

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