KEGG T01131: IscW

Ixodes scapularis (black-legged tick): IscW_ISCW015559

Entry

IscW_ISCW015559 CDS T01131

Definition

SMC protein, putative (EC:1.3.1.74)

Orthology

K10866

DNA repair protein RAD50 [EC:3.6.-.-]

Organism

isc Ixodes scapularis (black-legged tick)

Pathway

isc03440	Homologous recombination
isc03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:isc03440]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:isc03450]

SSDB

Motif

Pfam:

AAA_23 SbcCD_C AAA_13 ABC_tran AAA_21 AAA_29 FtsK_SpoIIIE AAA_19

Other DBs

NCBI-GI:

NCBI-GeneID:

VectorBase:

UniProt:

AA seq 1258 aa
KSRSVERLVGLAMSMLEKLQIQGIRSFGPTDANKQMMSFFSPLTLILGSNGTGKTTIIEC
LRNATTGDLPPGQGKVFIHDPKLNHETEVNASIKLKFQDVRGEPYVVNRLFLLKQNKNNT
TFKTVDANIVHRDQEGNKTTATSKCCDINATVVELLGVPRAILENVIFCHQTDSNWPLSE
GQTLKTKFDNIFAATQYIKALENIRKLRLEYNQGIKLLSESTKYLKANKEKADEYEEEIA
KDERKLADCIGTLQDIETKLEPLHLEWKEMEKKEDEARNFHSKLSSERDQLDYTRNEIQR
ITRNLKESEKTAVEETSRKVERKSESLNQKLSLGVTLCREDSLEKKVSLVVSCLDNRVSD
LQLNFETTKEKREAHEKSLQDSIDSVRERKSKSEQKRESTQKQIADNQKKIMVIRKELLQ
AEGYCSEIRELEAEIGKFEDQLASLERELPSDQLKDKIADKQRSKDEITDKLENLNRELA
SAQKFSKEQSELEHIRQELSEKIKSLEQAKVESERKFMELLGTFPASDYAKQVNEKISSL
GSEVSSLRDSVTKLRTTESSLETKLKMLEDDLKKKEKELDKSRKKVISVCGSENLDGSIQ
QLKLEMTKMRDEKGFITGSAFMFRKYIERMRQSPCCPLCKRHFEELELVNRLIEDLEKKM
RILPEELNKKTREIDDREHKFNDMQRLKGEEEKMSKLKNNELPEVKAKILNATTERDRLT
SLKASKEEQLDMKIFDLEMARSLLGEAETMDRLSRERDVLRRQLDSKSPNVQRLKQGRTM
ENIMAEIRDLNGQARELESIMLDYRAKQDQYHSLGMSLNAARSKKLQLESKKKEESRLRK
QKTELESESENLKLSLDPLMKEKEELQKQLQKAVWAKESAVNETRRLLEDLRSELSVRML
EREDLKKHFDKVQEYFQSNNPEELQDVRKKLDDLKGEIEHLQLVRDEKTALIDTLEKKLS
RQELRERELKDNLHLHMLQVQSEQHKVKIDEIKNQMRNSGLVNLESEKKKIGEKINKLRG
DRNFSESKKGELKVKIDAARRELSGHFKDAKKKYMTALCEKSVKDYISKDLDMYYRAVNF
AVLKYHEQKMKDINKVIKQLWQDTYSGDDIDYVQIRTDADEKGLENSRRAYNYRVVMMKG
RIEQDMRGRCSAGQKVLASLIIRLALAETFCQNCGILALDEPTTNLDRSNIKGLALSLGK
IVEARMRQRNFQMIVITHDEEFLRLLSQRISVAEYFYKVEKTDMGYSKLQKARLGTIM

NT seq 3777 nt +upstreamnt +downstreamnt
aaatctcgatcggttgagcgacttgtcggcctcgccatgtctatgctagaaaagttgcaa
atccaaggcattcggagcttcggaccgaccgacgccaacaagcagatgatgtcgtttttc
tctccgctgaccctcatcctcggcagcaacggtacgggcaagacgaccatcatcgaatgc
ctgcgcaacgcgacgacgggcgaccttccccccggccagggcaaggtattcatccacgac
cccaagttgaatcacgagacggaggtcaacgcctcgatcaagctgaagtttcaagacgtc
agaggcgaaccgtacgttgtgaatcggctctttctactgaaacagaacaagaacaacacc
acctttaaaacggtcgacgcaaatatcgtccatcgggaccaggagggcaacaagacgact
gccacctctaagtgctgcgacatcaacgctaccgtcgtcgaactcttgggcgttcctcgc
gccattttggagaatgtgatcttctgccaccagactgactccaactggccgctgtcggaa
ggccagacactcaagaccaaattcgacaacatcttcgccgccacacagtacatcaaggcg
ctcgaaaatattcgtaagctgcggctggagtacaaccagggcatcaagctgctcagcgag
agcacaaagtacctcaaggccaacaaggagaaggcagacgagtacgaagaggagatcgcc
aaggatgagaggaagctcgccgactgcatcgggacgctgcaagacatagagaccaagctc
gaaccactgcacctcgaatggaaagagatggagaagaaggaagacgaggcacgtaacttc
cacagcaagctctcctcggagagagaccaacttgattacaccaggaatgagatacagcgc
atcacccgaaacctaaaggagagtgagaagacagcggtggaggagacctcccgtaaagtg
gaacgcaagtctgagagcttgaaccagaagctgtctctgggagttaccctatgccgagag
gactcgctagagaaaaaggtatctctcgtagtgtcttgccttgacaacagggtgagtgac
cttcagctcaactttgaaacgacgaaggagaagcgtgaagctcacgagaaaagtctgcag
gacagcatagactctgtgcgagagcggaaatccaaatctgagcagaagcgggagtcgacg
cagaagcaaattgccgacaaccaaaaaaagatcatggtgattcgtaaagaactgctgcaa
gctgaaggttattgttctgaaatcagggaactcgaggcagaaattggaaaatttgaggat
caacttgcgtccctggagagggagcttcctagtgaccagctcaaggacaagattgcggac
aagcagagatcgaaagacgaaatcactgataagctggaaaacctcaacagggagctcgca
agtgcacagaagttcagcaaagagcagtctgagcttgagcacattaggcaagagttgagt
gaaaagattaagtcgctcgagcaagctaaagttgaaagtgagcgcaagttcatggagctc
ctgggaacatttccggcctcagattacgctaaacaagtaaacgaaaaaatttcatccctc
ggctccgaagtgagttcacttcgcgacagtgtcaccaagttgcggacgacggaaagctcc
ctggaaacgaagctaaaaatgctggaagatgatctcaagaaaaaagaaaaggagcttgat
aaaagcagaaagaaggttatcagtgtgtgtggttcggaaaacttggatggcagcatccag
cagttgaagctcgagatgacgaaaatgcgtgacgagaagggcttcatcacaggaagcgca
ttcatgtttcggaagtacattgaacgcatgagacagagcccctgctgtcctctgtgcaaa
aggcacttcgaagagctggagttagtcaacaggcttattgaagatcttgaaaaaaagatg
agaattcttcctgaagagctgaacaaaaagaccagagaaattgatgacagagaacacaag
ttcaacgacatgcaaaggttaaagggagaagaagagaagatgtcgaagctgaagaacaat
gagttgcccgaggtgaaggcgaaaattctcaatgcaacaaccgagcgtgacaggttgacc
agcttaaaagcaagcaaggaagagcaacttgacatgaagatctttgatttggagatggcc
cggtctctcttgggcgaagccgagacaatggatcggctgtctcgggaaagagatgttctt
cgccgtcagctagacagcaaatctccaaatgtccaacgactcaagcaaggtcgaaccatg
gaaaacattatggcagagattcgagacctcaatggtcaggcaagagagctggagtcaatc
atgcttgattaccgtgcaaagcaggaccaataccacagcttgggaatgtctctgaatgct
gctcgcagtaagaagctgcagctagaatccaagaagaaggaagagtctcgtctcaggaaa
cagaagacggagctggaatcggaaagtgagaacctcaaattgtcccttgacccactgatg
aaagagaaggaagaacttcagaagcaacttcaaaaggcagtctgggccaaggagagtgct
gtcaacgaaactcggcgtttgttagaggatttgcggtcggaactaagtgtacgaatgctc
gaacgggaggacctgaagaagcacttcgacaaggttcaggaatatttccagagcaataat
cctgaagagctgcaggatgtaaggaaaaagctggatgacctcaaaggggaaattgaacat
cttcagctggttagagacgaaaaaacagcactcatcgacactctggaaaaaaagctgtct
aggcaagagctgagggagcgtgagctgaaggataaccttcacctgcatatgcttcaagtg
cagagcgagcagcacaaagtgaagattgatgaaatcaagaatcagatgagaaactcgggc
cttgtcaatttggaatcggaaaagaaaaagattggcgagaaaatcaacaagcttcgaggt
gacaggaacttctcggagagcaagaaaggagagctcaaggttaagattgatgcagcgaga
cgagagctgagtggtcatttcaaggatgctaaaaagaagtatatgacagctctttgtgag
aaaagtgtgaaggattatatcagcaaggacctggacatgtattacagggcagtcaacttt
gctgttctcaagtaccatgaacagaaaatgaaggacatcaacaaagtcatcaagcagctt
tggcaggacacctacagcggggatgacattgactatgtccaaatccggacagatgcggat
gaaaagggcttggagaactctagaagagcctacaactaccgtgtcgtgatgatgaaagga
agaattgaacaggacatgagaggccgctgcagcgcaggccagaaggtgctggcgtccctc
atcattcgattggcattggccgaaaccttttgccagaactgtgggatcctggcactcgac
gagcctacaaccaacctagaccggagcaacatcaagggcctggcgctttctctggggaag
atagtagaggccaggatgcgccagcgcaacttccagatgattgtcatcacgcatgacgaa
gagtttcttcgccttctgagccaaaggatttcggtggcagagtatttctacaaggttgag
aagacagacatgggctactccaagcttcagaaggctcgcctgggaacaattatgtag

All links

Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   UniGene (1)   
   OC (1)   
   VECTORBASE-ISC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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