KEGG T01520: Isova

Isoptericola variabilis: Isova_1645

Entry

Isova_1645 CDS T01520

Definition

DNA polymerase LigD, polymerase domain-containing protein

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

iva Isoptericola variabilis

Pathway

iva03410	Base excision repair
iva03420	Nucleotide excision repair
iva03430	Mismatch repair
iva03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:iva03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:iva03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:iva03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:iva03450]

SSDB

Motif

Pfam:

DNA_primase_S

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

1778044..1779117

AA seq 357 aa
MASANAVELEADGRPVRVTSPDRVVFPERGITKLQVVEYFLSVGDGILGALLHRPTTLER
WPKGVFEGAVMATRADNRGDAFYQKRVPKGAPEYVETATIAFPSGRTADEVAPTELAVVA
WAANLGTLTFHPWPVRRDDVEAVDQLRIDLDPQPGTDFDDAAAVAPHLRELLGELGLTGY
PKTSGGRGIHVFVPLAPRWSFVQARRATIAIGRELERRLPDRVTTKWWKEERGSKIFVDY
NQMARDRTIASAYSIRPNKRATVSTPLEWDEVDQVHPDDFDVTTVPARFAERGDLFAALR
ADRDPELDCSLDAALALARRDEEEHGLGDLPYPPEYPKMPGEPKRVQPSRDRDRPRA

NT seq 1074 nt +upstreamnt +downstreamnt
atggcctccgcgaacgccgtcgagctcgaggccgacggccgccccgtccgcgtcaccagc
cccgaccgggtcgtgttccccgagcgcggcatcaccaagctccaggtggtcgagtacttc
ctgtccgtgggcgacgggatcctcggcgcgctgctgcaccgccccacgacgctcgagcgc
tggcccaagggcgtgttcgagggcgcggtgatggccacgcgcgccgacaaccgcggcgac
gcgttctaccagaagcgcgtgcccaagggtgcccccgagtacgtcgagaccgccacgatc
gcgttcccctcgggccgcaccgccgacgaggtggccccgaccgagctggccgtcgtcgcg
tgggcggcgaacctcggcacgctgacgttccacccgtggccggtgcggcgcgacgacgtg
gaggcggtcgaccagctgcgcatcgacctcgacccgcagcccggcaccgacttcgacgac
gcggccgccgtggccccgcacctgcgcgagctgctcggcgagctgggcctcacgggctac
cccaagacgtcgggcgggcgaggcatccacgtcttcgtgccgctggcgccgcgctggtcg
ttcgtgcaggcccgccgggcgacgatcgcgatcggccgcgagctcgagcggcggctcccg
gaccgggtcaccaccaagtggtggaaggaggagcgcgggtccaagatcttcgtcgactac
aaccagatggcccgcgaccgcaccatcgcctcggcgtactcgatccggcccaacaagcgg
gccacggtgtcgacgccgctcgagtgggacgaggtcgaccaggtgcaccccgacgacttc
gacgtcacgaccgtcccggcccggttcgccgagcgcggcgacctgttcgccgccctgcgc
gccgaccgcgaccccgagctcgactgctcgctcgacgccgcgctcgcgctcgcgcgccgc
gacgaggaggagcacgggctcggcgacctgccctacccgcccgagtacccgaagatgccg
ggcgagccgaagcgcgtgcagccgagccgggaccgcgaccgtccgcgcgcctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-IVA (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

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