KEGG   Janthinobacterium sp. B9-8: VN23_15575
Entry
VN23_15575        CDS       T04271                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
jab  Janthinobacterium sp. B9-8
Pathway
jab03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:jab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    VN23_15575
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:jab03021]
    VN23_15575
   03400 DNA repair and recombination proteins [BR:jab03400]
    VN23_15575
Enzymes [BR:jab01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     VN23_15575
Transcription machinery [BR:jab03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     VN23_15575
DNA repair and recombination proteins [BR:jab03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      VN23_15575
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 Apocytochr_F_C OPA1_C
Other DBs
NCBI-ProteinID: AMC35921
UniProt: A0A0X8GPK2
Position
complement(3441369..3445568)
AA seq 1399 aa
MKGLLELFKQVAANEEFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRDRMGHIELASPVAHIWFLKSL
PSRLGMVLDIPLRDIERVLYFEGFVVIEPGMTPLTRGQLLTEEDYFNKVEEYGDEFVALM
GAEAVRELLKSMDVEDQITTLRAELSSTGSETKIKKISKRLKVLEAFQRSGIKPEWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKLMGLELFKPFIFHKLEVLGLATTIKAAKKMVEAQDPVVWDILEDVIREHP
ILLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTRERINAKGEGMYLIDVSEAMRAYASK
EVTLQTRVDIRLKEWVKDEDGEWQAQMVRRSTTVGRAILSEILPKGLDFSHIDKALKKKE
IGKLINASFRRCGLKDTVIFADQLMYTGFAYSTRGGISICVDDMVVPDKKVQLLAESYAE
VREIEHQYSSGLVTQGERYNKVVDIWGRAGDQIAKAMMDQLGKEKVINREGVEVDQDSFN
SVFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITTNFREGLTVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTKNGVVMKAVVQGGDVIEALRDRIL
GRVVVLDVIDPVTHETVFPVGTLLGEDEVEEIEHLGVDEVKVRTPLSCETRYGLCAACYG
RDLGRGHLVNTGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAATQVESKSSGNIAY
SPNMRYVTNAKGDPVVIARSAEVIVVDDNGRERERHKVPYGATLTVKDGDSIKAGGVLGT
WDPHTRPIISEYAGQVKFDNVEEGITVMKQVDDVTGLSTLVVIDPKRKGGKATGVRPMVK
LLDERGGEVKMAGTDTTVMIGFQVGCIITVKDGQVVGVGDVLARIPQESAKTRDITGGLP
RVAELFEARIPKDPGMLAEITGTVSFGKETKGKQRLVLTDLEGAPHEYLILKEKHVLVHD
GQVVNRGESIVDGAIDPHDILRLQGIEALSRYVVQEVQEVYRLQGVKINDKHIEVILRQM
LRRVIITDSADSAFIQGEQVERAEVLTVNDKLIAEGKLPASYDNVLLGITKASLSTDSFI
SAASFQETTRVLTEAAIMGKIDDLRGLKENVIVGRLIPAGTGLAYHRNRKRQAPVVDQLA
DIFAPTAEAETAASGEVGV
NT seq 4200 nt   +upstreamnt  +downstreamnt
atgaaaggcttactcgaactcttcaagcaagttgctgcaaatgaagaatttgatgcgatt
aagatcggtctggcgtcgccagaaaaaatccgctcttggtcgttcggcgaagtaaaaaag
ccggaaaccattaactaccgtacatttaagccagaacgtgatggcttattttgcgcgcgt
atttttggcccaatcaaagattacgaatgcctgtgcggtaagtacaaacgcctgaagcat
cgtggcgtgatctgcgagaagtgcggtgtggaagtgaccctgtctaaggttcgtcgcgac
cgcatgggacacatcgagctggctagcccagttgcacacatctggttcttgaaatccctg
ccatcgcgcttgggtatggtgcttgatatcccattgcgtgatatcgaacgcgtactttac
ttcgaaggttttgtggtgatcgagccaggcatgacgccgctgacacgtggccaattgctg
actgaagaagattacttcaataaagttgaagagtacggtgacgaattcgtagccctgatg
ggtgcggaagcggtgcgtgagcttttgaagagcatggatgtagaagaccaaatcaccacc
ttgcgtgctgaattgtcctccaccggctctgaaactaaaatcaagaagatttccaagcgc
ctgaaagtgctggaagccttccaacgttccggcatcaagccagaatggatggttttggaa
gttctgcctgtattgccgccagaattacgtcctctcgtaccattggatggtggtcgtttc
gctacttcagatctgaacgatctgtatcgtcgcgtgattaaccgtaataaccgtctgaaa
cgtcttttagaattgcgcgcgcctgaaattatcgtgcgtaatgaaaagcgtatgttgcaa
gaagcggttgattccttgctcgataacggccgtcgcggtaaagcgatgacgggtgcgaac
aagcgtcctctcaaatccttggccgatatgatcaagggtaagggcggtcgtttccgtcag
aacttgttgggtaagcgcgtagattactctggtcgttcggttattaccgtgggcccgaca
ctgcgtctgcatcagtgcggcttgccaaaactgatgggtctggagctgttcaagccattt
attttccacaagcttgaagtgcttggtcttgcgaccaccattaaagcggcgaaaaaaatg
gtggaagcccaagatccagtcgtttgggacatcttggaagatgtgattcgcgaacatccg
attctcttgaaccgtgcgccaacacttcaccgcttgggtattcaagcgtttgagccagtg
ttgatcgaaggtaaagcgattcaactgcatccactcgtctgcgcggcattcaatgccgac
tttgacggtgaccagatggctgttcacgttccactgagccttgaagcgcagatggaagca
cgcaccttgatgctggcttctaacaacgtattgtcgccagctaacggcgagccaattatc
gttccttcgcaggatatcgtgctgggtctgtattacatgactcgtgagcgtatcaatgcc
aagggcgagggcatgtacctgatcgacgtaagcgaagcaatgcgcgcttatgcgagcaag
gaagtaaccttgcaaacgcgtgttgatatccgcctgaaagaatgggtaaaagacgaagac
ggcgaatggcaagctcagatggtgcgtcgtagcaccacagttggtcgtgcgatcttgtct
gaaattctgcctaagggtttggacttcagccacatcgataaagcgttgaaaaagaaagaa
attggtaagctgattaacgcttcattccgccgttgcggtctgaaagataccgttattttt
gcggatcaactgatgtacaccggttttgcttattcgacacgcggcggtatctcgatttgc
gttgatgatatggttgtgccggataaaaaggttcagcttctggctgagtcttacgctgaa
gtgcgcgagatcgagcatcagtacagctccggtctggtgactcagggtgaacgttataac
aaggttgtggatatctggggccgtgccggtgatcagattgccaaggcgatgatggatcag
ctcggtaaagagaaggtcatcaaccgcgaaggcgttgaagtcgatcaagactcgtttaac
tcagtatttatgatggccgattccggtgcccgcggttctgcagcgcagattcgtcagctg
gctggtatgcggggtttgatggctaaaccggacggttcgattattgaaacgccgattacc
accaacttccgtgaaggcttgaccgttcttcagtactttatctccacccacggtgcacgt
aagggtctggcagatacggcgctgaaaacagcgaactcgggttacctgactcgtcgtctg
gttgacgtaacgcaagacttggttgtgattgaagacgattgcggcaccaagaacggcgtg
gtcatgaaggcggttgtacagggtggtgatgtgattgaagcactgcgtgatcgtattctg
ggtcgcgtggtagtgctcgatgtgatcgatcctgttacgcacgaaacagtgttcccagtg
ggtacattgctgggtgaagacgaagttgaagagatcgaacaccttggtgttgacgaggtt
aaggttcgtactccgctatcttgcgaaacacgttatggcctatgtgccgcgtgttacggt
cgtgaccttggtcgtggtcatctggtgaatacgggtgaagcagtgggtgttatcgctgct
cagtcgattggtgagccaggtacacagctgaccatgcgtaccttccacatcgggggtgcg
gcttctcgtgcggctgcggcaacacaagtagaatcgaaatccagtggtaatatcgcgtac
agcccgaacatgcgctatgtgaccaatgccaagggtgatccagttgtgattgcacgttct
gctgaagtgattgttgttgatgacaatggtcgtgagcgtgagcgtcataaagtgccgtat
ggtgcaacactgactgttaaagatggcgatagcatcaaagccggtggcgtactgggtacg
tgggatccgcacactcgtccaattatttcggaatacgccggtcaggtgaagttcgataat
gtggaagagggtattaccgtaatgaagcaggtcgatgatgtgaccggtctttcgaccttg
gttgttatcgatcctaagcgtaaaggcggtaaggcaactggcgtacgtccaatggttaag
ttattggatgaacgtggtggcgaagttaaaatggcgggtactgacactaccgttatgatc
ggtttccaagtgggttgtattatcacggtgaaagatggtcaagtggttggtgtgggtgat
gtgttggcgcgtattccacaagaatctgctaagactcgcgatattaccgggggtctgcca
cgtgttgctgagttgtttgaagcgcgtattccgaaagatccgggtatgttggctgaaatt
accggtacagtttccttcggtaaagaaactaagggtaaacagcgtctagtcttaacggat
ctggaaggtgcgccgcacgaatacctgatcttgaaagaaaaacacgtactggttcacgat
ggtcaggttgttaaccgtggtgaaagtattgtggacggtgcgattgatccgcacgatatc
ttgcgtctgcaagggatcgaagcgttgtcacgctacgttgtacaagaagtgcaggaagtg
tatcgtttgcagggtgtaaagattaacgataagcatattgaagttattcttcgtcaaatg
ttacgtcgtgtcatcattactgattctgcagattctgccttcattcagggtgagcaagtt
gagcgcgcagaagtactgacagtgaacgataagttgattgctgagggtaagttaccagca
agctacgataatgttctgttaggtattactaaagcatctctgtctacagattcgtttatt
tcagcggcttccttccaggaaaccacgcgagtgctgactgaagcagccatcatgggcaaa
attgatgacttgcgcggtctgaaagaaaacgtcatcgtaggtcgcttgattcctgcgggt
actggcttagcttaccatcgtaatcgtaagcgtcaggcaccagttgttgatcaattggct
gacatttttgcaccaactgcagaggctgaaaccgctgcaagtggtgaagttggggtctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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