KEGG T00330: Jann

Jannaschia sp. CCS1: Jann_2667

Entry

Jann_2667 CDS T00330

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

jan Jannaschia sp. CCS1

Pathway

jan03410	Base excision repair
jan03420	Nucleotide excision repair
jan03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:jan03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:jan03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:jan03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

2677458..2679056

AA seq 532 aa
MKAFAALFTTLDQTTKTSVKTAALADYFRTAPEDDRIWTIALLSGRRPRRTITTTKLREW
AAERAGIPLWLFEACYPVVGDLSETIALVLPEPETRIDKSLSAWIATLRGLDNAEEDARK
AAILEAWNGLPPIERFVFNKLITGGWRMGVSQKLMTRALSKATDIDEAELTHRLMGDWSP
DTVSWDGLIEAPDPTTNLSRPYPFYLAYQLEGDAEDQGGVGDWVAERKWDGIRGQLIMRG
GERYLWSRGEDLMTDRFPEFAQLLDYLPSGTVLDGEVLAYDFVNNTPLSFNKLQPRIGRK
TVPKKLLAEAPCILMAYDLLEWQGADIRHRPLAERRALLEEATDNMPPDAPLRLSPRVEA
ESWDDLRAARAISRDIGAEGLMLKRLSAPYLAGRKKGDWWKWKVDPLTIDAVMIYAQAGS
GRRATLYTDFTFAVWNGPDLVPFTKAYSGLTDKEFREITAWVRKNTTDRFGPVRAVTPHH
VFEIAFEGIQPSPRHKSGVALRFPRMLRWRKDKPLEEANTLDDLNQMLEQYG

NT seq 1599 nt +upstreamnt +downstreamnt
atgaaggccttcgccgcccttttcacgacgctggatcagaccaccaagaccagcgtgaag
acggccgcgctggccgactatttccgcacggcgcccgaggatgaccggatctggaccatc
gcattgctttcgggccgacgtccgcgccgcaccatcaccaccacaaaactgcgcgaatgg
gcggcggagcgggcgggcattccgctgtggctgtttgaggcctgttatccggtcgtgggt
gacctgagcgagaccattgcccttgttttgccggagcccgagacccggatcgacaaaagc
ctgagcgcctggatcgccacgctgcgcggcctcgacaatgcggaggaggatgcgcgcaag
gccgcgattctggaggcctggaacggtctgcccccgatcgaacggtttgttttcaataag
ttgattaccggcggctggcgcatgggggtgagtcaaaagctgatgacccgcgcgctgtcg
aaggccactgacatcgatgaggcggaactgacacaccgcctgatgggcgattggtcgccc
gacacggtcagttgggacggcctgatcgaagcgcccgatccaacaacgaaccttagccga
ccctacccgttctatctggcttatcagctggagggcgacgcggaggaccagggaggcgtc
ggcgattgggtggcggagcggaaatgggacggcattcgcggccagctgatcatgcgcgga
ggcgagcgctatctgtggtcgcgtggcgaagacctgatgacggaccggttcccggagttt
gcgcagctgctggactacctgccctcggggacggttcttgacggcgaggttttggcgtat
gactttgttaacaacaccccgctttcgttcaataagttgcaaccgcgtatagggcgcaaa
actgtgcccaagaagcttctggccgaggccccgtgcatcctgatggcctatgatctgctg
gaatggcagggcgcggacattcggcacaggccgttggccgagcggcgcgctttgttggag
gaggccaccgacaatatgccacccgacgcccccctccgcctgtcgccgagggtggaggcc
gagagttgggacgacctgcgcgccgcacgcgccatcagccgcgacataggggcagagggg
ttgatgctgaagcgtctttcggcaccctatctagccgggcgcaaaaagggcgattggtgg
aaatggaaggtcgatccactgaccatcgacgcggtgatgatctatgcgcaggcgggttcc
ggccggcgggcaacgctctacaccgatttcacattcgcggtctggaacggccccgatctg
gtgcccttcaccaaggcctattccggcctcaccgacaaggaattccgcgagatcacggcc
tgggttcgcaagaacacgacggaccggttcggccccgtccgcgcggtcacgccgcaccat
gtgtttgagattgcgttcgaaggcattcaaccctcaccgcgccacaaatccggcgttgcc
ctgcgctttccccgcatgttgcgctggcgcaaagacaagccgttggaagaggccaataca
ttggacgacctcaaccagatgctggaacaatacggctaa

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-JAN (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

Download RDF

DBGET integrated database retrieval system