KEGG   Janthinobacterium sp. 1_2014MBL_MicDiv: YQ44_24680
Entry
YQ44_24680        CDS       T04539                                 
Name
(GenBank) formamidopyrimidine-DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
jaz  Janthinobacterium sp. 1_2014MBL_MicDiv
Pathway
jaz03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:jaz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    YQ44_24680
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:jaz03400]
    YQ44_24680
Enzymes [BR:jaz01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     YQ44_24680
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     YQ44_24680
DNA repair and recombination proteins [BR:jaz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     YQ44_24680
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS NFACT_N OrfB_Zn_ribbon Auto_anti-p27
Other DBs
NCBI-ProteinID: APA70458
UniProt: A0A1I9Y366
Position
5690204..5691040
AA seq 278 aa
MPELPEVEVTRRGVAPHLEGRAVRSVVLRRDGLRWPFPPALGEQLSGQTIGLTGRRGKYL
LIHFRHGTLIIHLGMSGHLRVLPAGTEAQKHDHFDLVVEDADGASQVLRMTDPRRFGAVL
WHDEADGPLDSHVLLRGLGTEPLEGGFTGQLLFEKTRNKGSSIKQVLMAGDIVVGVGNIY
CSESLFRAGINPKTPAKRIGLARYEKLAQAIRDVLAEAIVQGGSTLRDFIGVNGQSGYFQ
QTYFTYNRTGKPCRVCGAPIRQIVQGQRSTFYCVHCQK
NT seq 837 nt   +upstreamnt  +downstreamnt
atgccagaattgccagaagtcgaagtcacacggcgcggtgtcgcgccccatctcgaagga
cgcgccgtgcgctccgtcgtgctgcgccgcgacggcctgcgctggcccttccctcccgcc
ctgggcgagcaattgtcgggccagaccatcggcctgacggggcggcgcggcaaatacctg
ctgatccacttccgccacggcaccctgatcatccacctgggcatgtcgggccacctgcgc
gtgctgccagctggcaccgaggcgcaaaagcacgaccatttcgacctcgtcgtggaagac
gcggacggcgccagccaggtgctgcgcatgacggatccgcgccgcttcggcgccgtgctg
tggcacgacgaggccgacggcccgctcgacagccacgtgctgctgcgcggcctgggcacg
gaaccgctggagggcggcttcacgggccagttgctgttcgagaaaacgcgcaacaagggc
agcagcatcaagcaggtgctgatggcgggcgacatcgtcgtcggcgtgggcaatatctac
tgttccgaaagcctgttccgcgccgggatcaacccgaagacgccagccaagcgcatcggc
ctggcgcgctatgagaaactggcgcaggcgatccgcgacgtgctggccgaagccatcgtg
caaggcggcagcaccctgcgcgacttcatcggcgtaaacggccagtccggctacttccag
cagacgtatttcacgtacaaccgcacgggcaagccatgccgcgtgtgcggcgcgccgatc
cggcaaatcgtgcagggccagcggtccacgttttactgcgtgcattgccaaaagtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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