KEGG   Jatropha curcas (Barbados nut): 105637572
Entry
105637572         CDS       T03922                                 
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE
  KO
K11643  chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
jcu  Jatropha curcas (Barbados nut)
Pathway
jcu03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:jcu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    105637572
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:jcu03036]
    105637572
Chromosome and associated proteins [BR:jcu03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    105637572
  Chromatin remodeling factors
   NuRD complex
    105637572
SSDB
Motif
Pfam: SNF2-rel_dom CHDII_SANT-like DUF1087 Helicase_C Chromo ResIII HDA2-3 PHD CHDCT2 Myb_DNA-binding zf-HC5HC2H SLIDE PHD_4 DUF2703 C1_1 zf-HC5HC2H_2 C1_2
Other DBs
NCBI-GeneID: 105637572
NCBI-ProteinID: XP_037493511
Position
Unknown
AA seq 1488 aa
MSSLVERLRVRSERKPVYNLDESDDDELISGKPGKSQEPIEKIVRPDAKDDCCQSCGESG
DLLSCETCNYAYHPKCLLPPLKATPPSNWRCPECVSPLNDIDKILDCEMRPTVAGDNDVS
KLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMASNNSSE
DDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELPYDECYWEFESDISAFQPEIERFNR
IQSRSRKLGKQKNNLRDATDSKKKAKEFQQYEHSPEFLTGGSLHPYQLEGLNFLRFSWSK
QTHVILADEMGLGKTIQSIAFLASLFEENISPFLVVAPLSTLRNWEREFATWAPQMNVVM
YVGSAQARGIIREYEFYHPKNHKKIKKKKSGLIVGESKQDRIKFDVLLTSYEMINLDTAS
LKPIKWECMIVDEGHRLKNKDSKLFLSLKQYSSNHRVLLTGTPLQNNLDELFMLMHFLDA
GKFASLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMTELPPKKELILRVELSSK
QKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDSNESYKQL
VESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKRWQYERIDGKVGGAER
QVRIDRFNSKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQ
TNKVMIYRLVTRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFA
DENDEAGKSRQIHYDDTAIDRLLDREQVGDEEASLDDEEEDGFLKAFKVANFEYIDEAEA
AAEAEAQKAAAEAKAAMNNSDRTNYWEELLKDSYEVHKVEEFNALGKGKRSRKQMVSVEE
DDLAGLEDVSSEGEDDNYEAELTDSETASSGTQPGRKPYRRRSRVDNMEPIPLMEGEGRA
FRVLGFNQNQRAAFVQILMRFGVGEYDWKEFAPRMKQKTYEEIRDYGVLFLSHIVEDITD
SPNFADGVPKEGLRIQDVLVRIAVLLLIRDKVKFASEKPGTSLFTDDIVLRYPGLKSGKF
WKEEHDLLLLRAVLKHGYGRWQAIVDDKDLRIQELICQELNLPFINLPVPGQAGSQAQNG
VNTVTTEAPSTQVQGNGGGNVLAADVAQGTNDVPNQQQLYQDSSILYHFRDMQRRQVEFI
KKRVLLLEKGLNAEYQKEYFADDSNANEITNEEPEIDIKAADGSGLTSVEINAQLIDQLP
QIEPITSEEISVAACDNNPDRLELPKLYNKMCNVLEQNVNELIQTSLTNEPASLKLRQDL
LPLETICQEINQIMSAEQQKAPASEEHVLDSNQTPQDNLLPESRSPSVEQNNDKPSDLDD
TEMTDVMTESKLEKEGSVLIDQELIKEQKKSPSDIPASADASLSPTESTGMRNADVDMED
VKNDAVGSPELGETDIDTDTKTEAIPIGNKDENEVADKSNSGVIVLDD
NT seq 4467 nt   +upstreamnt  +downstreamnt
atgagtagcttggtagagaggcttcgtgttagatcggagcgaaaaccagtttataattta
gatgaatcagatgatgatgaacttatatcaggaaaacctgggaaatctcaggaaccaatt
gaaaaaatagtcaggcctgatgcgaaagatgactgctgtcaatcttgtggagaaagtggg
gatcttctgagctgtgaaacttgtaattatgcttaccatcccaagtgtctgcttccacca
ttaaaggctactcctcctagcaactggagatgccctgaatgtgttagtcctctaaatgat
attgataagatattggactgtgaaatgcgacccactgtagctggtgataatgatgtctct
aagttaggctcaaagcaaatttttgtgaaacagtatcttgtgaagtggaagggtttatct
tatctgcactgcacttgggtccctgagaaagagttcctaaaagcattcaagtcaaatcct
cgtctcaggactaaagtcaacaatttccaccgccaaatggcatcaaacaatagctctgaa
gatgactttgttgctataaggcctgaatggactactgttgaccggattcttgcttgcagg
ggagaggatgatgagaaggaatatcttgtgaaatataaagaacttccttacgatgaatgt
tattgggaatttgaatcagatatatcagcatttcagcctgaaattgaaagatttaataga
attcagtctagatctcgcaaactgggcaagcagaagaacaaccttcgagatgctactgat
tccaagaagaaagcaaaagaatttcaacagtatgaacatagtcctgaatttctaactgga
ggctccttgcatccgtatcaactagaaggcctgaacttcctacgtttttcatggtccaaa
caaacgcatgtaatacttgctgatgagatgggccttggaaaaactattcaaagtattgca
tttttagcatctctttttgaagaaaacatctcaccatttttggtagtagctccactttca
accttgcgaaactgggaacgtgaatttgcaacatgggcacctcaaatgaatgttgttatg
tatgttggctctgcacaagcacgtggcattataagggagtacgaattttatcatcccaag
aatcacaagaagatcaagaaaaagaaatctggtctaatagttggtgaaagcaaacaggat
aggataaaatttgatgtgctcttaacttcttatgagatgattaacttggatacagcatca
ttgaaaccaataaagtgggagtgcatgattgtcgatgaaggtcatcgtctcaagaataag
gactcaaaattgtttctttcattgaagcagtattctagtaatcatcgtgtacttttgact
ggaactcctcttcagaacaatctggatgaacttttcatgctcatgcacttccttgatgct
ggaaagtttgctagtttggaggagttccaggaagagttcaaggatataaatcaagaagag
caaatttcgagacttcataaaatgttggctccccatctcctaagaagggttaagaaggat
gttatgacagagctgcctccaaaaaaggagcttattctacgtgttgaattgagtagcaag
caaaaagaatattacaaagccattttgacccgaaactatcaaatattaactcgccgtggt
ggtgcacagatttctcttatcaatgtggttatggaattgcgcaagctttgctgtcatcct
tatatgttagaaggagttgaaccagatatagaagacagcaatgaatcttacaaacagctt
gtggaatcttctgggaagctccaactgttagacaaaatgatggtgaagcttaaagagcag
gggcatagagttctcatttattcacaatttcagcatatgctagacttgctggaagattac
tgcacttataagagatggcaatatgaacgaatagatggaaaggttgggggtgcagagaga
caagttcgaatagatcgatttaattccaaaaattcatcaagattttgttttctgctttct
actagagcagggggattgggaataaaccttgcaactgctgatacagttataatatatgac
agtgattggaaccctcatgctgatcttcaagcaatggctagggctcatcgacttggccaa
accaacaaggtaatgatttataggctcgtcactcgaggaactattgaggagcggatgatg
caaatgactaagaagaaaatggttttagaacatcttgttgttggcaggttgaaggcacaa
aatattaaccaggaagagttagatgacatcatcagatatggttcaaaggagctatttgct
gatgagaatgatgaagcaggaaaatcacgccaaattcattacgatgacactgctatagac
cgattacttgaccgtgaacaagttggagatgaagaggcttcattggatgatgaagaggaa
gatggatttttgaaggcctttaaggttgcaaattttgagtacattgacgaagcagaggct
gcagcagaggcagaagctcaaaaagcggcagcggaagcaaaagccgcaatgaataattct
gatagaacaaattactgggaagagttgttaaaagatagttatgaagtgcataaggttgag
gagtttaatgcattgggcaaggggaaaagaagccgtaaacagatggtgtcggttgaggaa
gatgatcttgctggtttggaagatgtaagctctgaaggcgaggatgacaactatgaagct
gagttgactgatagtgaaacagcttcttccggaactcagcctgggagaaagccatacaga
aggagatctcgtgtggataatatggaaccaattcctttgatggaaggtgagggaagagca
ttcagggtattgggattcaatcaaaatcagagggctgcatttgtacaaattttgatgagg
tttggggtaggggaatatgactggaaggagtttgcaccccgcatgaaacagaagacatat
gaagaaataagagattatggggttcttttcttgtctcacatagtcgaagacattactgac
tcaccaaattttgcagatggtgttcctaaagaagggctcagaatacaagatgtgcttgtt
aggattgctgtcctgcttctgatcagggataaggtaaagtttgcatcagagaagccaggc
acttcccttttcacagatgacatcgtattgcggtatccgggactgaagagtggaaaattt
tggaaagaagaacacgatttgctgttacttcgtgcggtattgaagcatggatatggaaga
tggcaagctattgttgatgacaaagacttgaggattcaggagctcatttgccaagagttg
aatcttccttttataaatctacctgtcccaggacaagctggttctcaagcccaaaatggt
gtcaacacagttaccacagaagctcctagcacgcaggtgcaaggaaatggtgggggcaat
gttttagccgctgatgttgcacaggggactaatgatgttcctaaccaacaacagttatat
caagattcttctatattatatcattttagagatatgcagagacggcaggttgaattcatt
aagaagagagtgcttcttttggagaaagggctaaatgcggagtaccagaaagaatacttt
gcggatgactcgaacgcaaatgagattacaaatgaagagcctgaaattgacataaaagct
gctgatggctcgggtttaacttctgtagagatcaatgcacaattgattgatcagttgcct
caaattgaaccaattacatcagaagaaatttcagtggctgcttgtgataataatccagat
agattggaattgccaaagctttataacaagatgtgcaatgtgttggagcaaaatgtcaat
gaattaattcagacatccctaaccaatgaaccagcgagtctcaagttgaggcaggacctt
cttcctttggagaccatttgtcaggagataaatcaaattatgtctgctgagcaacagaag
gcgcctgcttctgaagagcatgtactggattcaaatcaaacaccacaggacaatctacta
ccagaatcacgttcaccttccgttgagcagaataatgacaagccctctgatttggacgat
actgagatgacagatgtaatgacagagtcgaaattggaaaaagaaggcagcgtgttgata
gaccaggagctgattaaagagcagaagaaatctccatctgatattccagcttctgcagat
gcatccctgtctccaacggaatctacaggaatgcgcaatgctgacgttgatatggaagat
gttaaaaatgatgctgtcggttcaccagagttgggagaaacggatattgatactgacacc
aaaactgaagccataccaattggaaataaggatgaaaatgaggtagcagataaatcgaac
tcaggggtcattgttttagatgattga

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