KEGG   Jatropha curcas (Barbados nut): 105641287
Entry
105641287         CDS       T03922                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
  KO
K12607  CCR4-NOT transcription complex subunit 10
Organism
jcu  Jatropha curcas (Barbados nut)
Pathway
jcu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:jcu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105641287
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:jcu03019]
    105641287
Messenger RNA biogenesis [BR:jcu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     105641287
SSDB
Motif
Pfam: TPR_12 TPR_2 TPR_1 TPR_14 TPR_MalT TPR_8 TPR_10 TPR_19 TPR_16 SRP_TPR_like DUF627
Other DBs
NCBI-GeneID: 105641287
NCBI-ProteinID: XP_012081190
UniProt: A0A067K2C6
Position
Unknown
AA seq 866 aa
MDSRDSSSSQSTPAANRDSTAVGSSSTAEDDAVLSFTAALAKDAALHFQSRRFAECLAVL
HQLKLKKEDDPKVIHNIAITEFFQDGCSDPRKLLEVLNNVKKKNEQLAQASGEQVDSVSN
AGNKVILGSKGSGTTTYQFSAANSSTLVYMDEFDPAVTTLNIAIIWFHLHEYTKALSVLE
PLYHNIEPIDETTALHVCLLLLDVALACRDASKSADVLVYLEKAFGVGCVSQGDNASTTQ
QQSANLVAKSSSIPSSSSVADASSSDLVHSGNALENSLSRTLSLSEDTLEYESMFSLDIS
GQNLTRPSGLSASNDISRTQLDRSTSTIDLKLKLQLYKVRFLLLTRNLKQAKREVKLAMN
IARGRDSSTALLLKSQLEYARGNHRKAIKLLMASSNRTEMGISSMLNNLGCIYYQLGKYQ
ASSVLFSKALSSCASLRKDKPMKLLTISQDKSLLIMYNCGIQQLACGKPLLAARCFQKAS
LIFYNYPILWLRLAECCLLALEKGLIKASRIPSDQSEIIVHVIGKGKWRHLAIENGSLRN
GYVDSIEKEDLFLGSDGQPKLSVSLARQCLLNALHLLDSSDMNHLTSSLPSSISLDENES
VEAVSLKNSNHKNLTGLDTKTSAVSVGLGQLNANGDTKEQKGGTSQEIMQNFVSDFEDIL
RRENQMIKQALLANLAYVELELENPEKALSTAKSLLELPECSRIYTFLGRMYAAEALCLL
NKPKEAAEHLSRYFSGGNSVELPFSQEDCERWRVEKTFDCEEPNGGSATVKNSSSEESRG
IVFLKPEEARGILYANFATLYAAQGDLERAHHFVTQALSLVPDSPEATLTAIYVDLMLGK
SQAAISKLKQCSRVRFLPSHVQLNKS
NT seq 2601 nt   +upstreamnt  +downstreamnt
atggactcgcgagattcgtcttcatcgcaatcgacgcccgccgctaatcgagattctacg
gcggttggctcgtcatccactgccgaggacgatgccgttctttctttcaccgctgctctt
gccaaggacgcagccttgcatttccagtctcgccgcttcgctgagtgccttgccgttttg
catcagcttaagctaaagaaagaagacgatcccaaagttattcataatattgctattacg
gaattctttcaagatggatgttcagatccaaggaagttgcttgaagttcttaataatgtg
aagaagaaaaatgaacagcttgctcaagcatcaggagaacaggttgactctgtgagtaat
gccggaaataaagttattttggggtccaagggaagtggtacaaccacataccaattttct
gctgcaaatagttcgacacttgtttacatggatgagtttgatccagcagtcacaacatta
aacatagcaattatctggtttcatcttcatgaatatacaaaggcattatctgttttggaa
cctttgtatcacaatatcgaacctattgatgagacaactgctctccatgtttgccttctg
ttgctggatgttgcacttgcctgccgggatgcatcaaaatcggctgatgtacttgtttat
ctggaaaaagcttttggtgttggctgtgtgagtcaaggtgataatgcaagcaccacacag
caacaatctgcaaatctagttgcaaaatcatcctctattccgagcagttcttcagtagca
gatgcttccagttcagatttagtgcatagtgggaatgccttggaaaattctttatcaaga
actttatcgttatcggaggatacacttgagtatgagtccatgttttcactggacataagt
ggacagaacttaaccaggccatctggtctctcagcttcaaatgatatttcgaggacccaa
cttgataggtctacatctacaattgatctgaagcttaagttgcagctctacaaggtccgt
tttctgcttctcacaaggaatttaaaacaagcaaagcgcgaagtcaagcttgctatgaat
attgcacgtgggagagactcatccacagctctcctcttgaagtctcagctagaatatgct
cgtggaaaccatcgtaaagccatcaagttgctgatggcatcaagtaaccggacggagatg
gggatttcaagcatgttgaacaaccttggttgcatttattatcagcttggaaaataccaa
gcttcatctgtcctcttctccaaggcacttagtagttgtgcatctctccggaaggacaag
cctatgaagctgttaactatctcacaagataaatctcttctcattatgtacaattgtggc
atacaacaattggcttgtgggaaacccttactggctgctcgatgtttccagaaggctagt
ttgatattttacaactaccctatcttgtggctccggcttgctgaatgttgcctcttggct
ttagagaagggacttataaaagccagtcgaattccatcagatcaatctgaaatcatagtt
catgttataggcaagggaaaatggaggcatcttgcaatagaaaatgggagtttaagaaat
ggatatgtggattctattgaaaaggaagacttgtttttgggcagcgatggccaacctaag
ctctctgtttctcttgcccggcagtgtcttctcaatgcgttgcatttgttggactcttct
gatatgaaccatttgacgtccagtttgccttccagtatttcattggatgaaaatgaatca
gttgaagcagtatctctgaagaactcaaaccacaagaatttaactggccttgatacaaaa
acgtcagctgtatctgttggcttaggtcagcttaatgcgaatggggacacaaaagagcag
aaaggaggtacaagtcaggagatcatgcagaattttgtttctgactttgaagatattctt
aggagagagaatcagatgattaagcaagctcttcttgctaacttggcatatgtagagttg
gaacttgaaaatcctgaaaaggccttatccactgccaagtctctcctggagcttccagaa
tgttcaagaatatatacttttcttggtcgtatgtatgcagcagaggccctctgtttgttg
aacaagccaaaggaagctgcggaacacttatcaagatatttttctggaggaaatagtgta
gagctgcctttcagccaggaggactgtgagcgatggcgagtggagaaaacttttgattgt
gaagagccaaacggaggatcagccactgtcaagaattcttcttcggaggaatcacgaggt
attgttttcctcaagcctgaagaggcacgaggtattctgtatgcgaattttgcaaccttg
tatgcagcccaaggtgatctcgagcgggctcaccattttgtgacacaagcattgtccctt
gtacctgacagtccggaggccactttgacagcaatttatgtggatcttatgctcggtaag
tcacaagcagctatttccaagttaaaacaatgtagtcgggtcaggttccttccaagccat
gtacaattgaataaatcttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (11)   
   Pfam (11)   
All databases (26)   

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