KEGG   Juglans regia (English walnut): 108990927
Entry
108990927         CDS       T05245                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like
  KO
K12607  CCR4-NOT transcription complex subunit 10
Organism
jre  Juglans regia (English walnut)
Pathway
jre03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108990927
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:jre03019]
    108990927
Messenger RNA biogenesis [BR:jre03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     108990927
SSDB
Motif
Pfam: TPR_2 TPR_12 TPR_1 TPR_19 TPR_MalT TPR_8 DUF627 Coatomer_E HTH_Crp_2
Other DBs
NCBI-GeneID: 108990927
NCBI-ProteinID: XP_018820600
UniProt: A0A2I4EMI0
Position
10:33776728..33790329
AA seq 862 aa
MDLRDSSSSTAAAAPNRDGYSGSDEDTLLSVAAALAKDAAFHFQSGNFAECVEVLKQLLL
KKENDPKVLHNVAIAEFFRDGGSDPKQLLEALNNVKKRIEDLASASGEQVEAASNLLNKV
TLGSKGSTMTHQLSSANNSNVVYTDEFDTSVAILNIGVIWFHLHEYAKALSVVEPLYQNI
EPIDETTALHICLLLLDVGLACNDAMKSADILSYMERAFGVGCMSQGDNGNTTQQQSGNL
VAKSSSFPLSNSSAMDVSHSDLAASVNASENSLSRTLSEEALDYETMFSSLDIGGQNSVR
PSGLSSPTNLTRTAVDRSFTTVDLKLKLHLYKVRFLLLTRNLKQAKREVKHVMNIARGKD
LSMALLLKSQIEYARGNHRKAIKLLVASSNRTDTAISSIFNNNLGCIYYQLGKFHTSSIF
FSKALTNTSYLRKEKPLKLSTFSQDNSFLIVYNCGIQYLACGKPILAARCFQKASLVFYN
RPLLWLRLAECCLMALEKGLIKASHAPSERSEVKVHVIGQGKWRQLVVEDGILRNRHVDS
VERDDCMLRSEGQLKLSMLLARRCLHNALHLLDCSESNHSKYDLSSNTSLEENESSGAAS
SRNSNHKNLQNIDSKTFTVTVGLGQANANGDAKEMKGGTSQEVIQNSLSYYEDICRNENQ
LIKQSILANLAFVELELENPMKALSITRSLLELPECSRIYIFLGHVYAAEALCLLNRPKE
AAENLLIYFSGGNNFDLPFSEEDCEQWQVERTVDSEELNGGSVTAKKNSTEDSQGIVFLK
PEEARAALYSNFAAVSAMQGQLEQAHQFATQALSILPNSREATLTSIYVDLMLGKSREAL
AKLKQYSRVRFLPSGVTMNRSS
NT seq 2589 nt   +upstreamnt  +downstreamnt
atggacttgcgagactcatcgtcatcgactgctgccgctgctcccaatcgcgacgggtac
tcgggctccgacgaagacacccttttatccgttgcggccgctctagccaaggacgccgcc
tttcactttcagtcgggaaatttcgctgagtgcgtcgaggtcctgaagcagctcttactc
aagaaggaaaacgatcccaaagttcttcacaatgttgcaattgccgaattctttcgggat
ggtggttcagatccgaagcagttacttgaagcacttaataatgtcaagaagagaattgag
gaccttgccagtgcatctggagagcaggtggaggctgctagcaatcttttgaataaagtt
actttggggtctaaaggaagtacaatgacacatcaactttccagtgcaaataattccaat
gttgtttacacagatgaatttgacacttctgtggcaatcctaaacattggggttatctgg
ttccatcttcacgaatatgcaaaggctttatcagttgtagaacctttgtatcagaatatt
gaaccaatagatgagacaacagctcttcatatttgcctcttgttgctagatgttggactt
gcttgcaatgatgctatgaagtctgctgatatattaagttacatggaaagagctttcggt
gttggctgcatgagtcaaggtgacaacggaaacacgacccagcaacagtctggaaaccta
gtagcaaaatcttcctcttttcctctcagcaattcatcggctatggatgtttctcattca
gatttagctgctagtgtgaatgcctcagaaaactctttatcaagaaccttgtcagaagag
gcacttgattatgaaactatgttctcatcactagatattggtggacaaaattcagtgagg
ccgtctggtctttcatctccaactaatctgacaaggactgcggttgataggtcttttacc
actgttgatttgaagcttaagttgcatctttataaagttcggtttctgcttctcactagg
aaccttaagcaagctaaacgagaagtcaagcatgttatgaatattgcacgtgggaaagat
ttgtccatggctctcctcctgaagtctcagattgaatatgcacgtggcaaccaccgtaaa
gccattaagctgttggtggcatcaagcaatcggacagacacagcaatctcaagcattttc
aacaacaatcttgggtgtatatattatcagcttgggaaattccatacgtcgtcgatattt
ttttcgaaggcgctgactaatacttcatatcttcggaaggaaaagccactaaagctgtca
actttctcccaggataattcttttctcatagtatataactgtggtatacagtacttggcc
tgtgggaagccaattcttgctgctcgctgtttccagaaagccagtttggtgttctacaac
cgacctctgttatggcttcgacttgctgaatgctgtctgatggctttggagaagggacta
ataaaagcaagtcatgctccatcagaaagatcagaagtcaaagtacatgttattggccag
ggcaaatggaggcaacttgttgttgaagatggaatattaagaaacagacatgtggattct
gttgaaagggatgattgtatgctgcgcagtgaagggcaactgaagctttcaatgttgctt
gcccgacggtgtctgcataatgctctgcacttacttgactgctccgagtcaaaccattca
aagtatgatttgtcttcaaatacctccttggaagaaaatgaatcaagtggagcagcttct
tcgaggaactcaaaccacaagaacttgcagaacattgattcaaaaacatttactgtaaca
gtaggtttaggtcaggctaatgcaaatggggatgccaaagaaatgaagggaggaacaagt
caggaggtcatacagaactctctctcctattatgaagatatttgtagaaatgaaaatcag
ttgatcaagcaatccattcttgctaacctggcgttcgtagagttggaactggaaaacccc
atgaaggccctgtcaatcaccaggtctctattggaacttccagagtgttccagaatttac
atatttcttggccatgtgtatgcagcagaggcactctgcttgttaaacaggccaaaggag
gctgctgagaatttattgatctatttttcggggggaaataattttgatttgccatttagt
gaagaggactgtgaacaatggcaggtggagagaactgtcgatagtgaagagttaaacgga
ggatcagtgactgccaagaagaattcaaccgaggactcgcaaggcattgtctttctaaag
ccagaagaggctcgtgcagcactttattcaaattttgctgctgtgtctgccatgcaaggt
caacttgagcaggcccatcaatttgcaacgcaagcactatccatattaccgaacagtcgg
gaagcaaccctgacttcaatttatgtggatctcatgcttggtaagtcaagagaagctctt
gccaagttaaagcaatatagtcgcgttaggttcctccccagtggcgtaacgatgaataga
tcttcttga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (32)   

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