KEGG   Juglans regia (English walnut): 108996671
Entry
108996671         CDS       T05245                                 
Name
(RefSeq) DNA topoisomerase 3-beta isoform X1
  KO
K03165  DNA topoisomerase III [EC:5.6.2.1]
Organism
jre  Juglans regia (English walnut)
Pathway
jre03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    108996671
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:jre03032]
    108996671
   03400 DNA repair and recombination proteins [BR:jre03400]
    108996671
Enzymes [BR:jre01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     108996671
DNA replication proteins [BR:jre03032]
 Eukaryotic type
  DNA Topoisomerases
   108996671
DNA repair and recombination proteins [BR:jre03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     108996671
   FA (Fanconi anemia) pathway
     108996671
SSDB
Motif
Pfam: Topoisom_bac Toprim DUF5795
Other DBs
NCBI-GeneID: 108996671
NCBI-ProteinID: XP_018828234
UniProt: A0A2I4F9A8
Position
7:22897986..22954929
AA seq 863 aa
MAPSKVLMVAEKPSIALSIASALSQGQMSTRKGSTDVHEFDGTFRGFHAHFKVTSVIGHV
FSVDFPATHQDWKVTDPLDLFHAPIIKAESNPKAHICRHLNQEARGCGHLVLWLDCDREG
ENICFEVIECTGFHARDASRRVYRARFSSVIGKDLMKAMDNLVEPNRDEALAVDARQEID
LKVGVAFTRFQTTYFQGKYGNLDSRVISYGPCQTPTLGFCVQRYLQITTFKPEKFWALRP
YIMQDGYELQLEWERNKLFDVDVTIMFQKLVMEDGILEVTEISEKQESKSRPSGLNTVNL
LKVASSGLGFGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLALLAKNPAWAND
VQRLLNDGYRKPQSGTDAGDHPPITPMMSATEDMLGKDAWRLYQYVCQHFMGTVSPDCKY
VRTNVKFSIGGEFFHCTGQHVTVEGFTSVMPWLAVKEKNLPRFIKGEKIEASKVELYEGS
TAPPDYLTESELISLMEKYGIGTDASIPVHINNICERNYVQVQAGRKLVPTSLGITLIRG
YQCIDPDLCLPDIRSFIEQQITLVAKGQMDHIHVVLHVLQQFKQKYTYFVKQIENMDALF
EAQFSPLADSGRALSKCGKCLRYMKYISMQPSRLYCGTCEEVYYLPQNGTIKLYKELSCP
LDNFELLIFSMPGPEGKSFPLCPYCYNSPPFEGVDTLFGAAKTGSTGKLGKGAGMPCFLC
PHPTCRHSLISQGVCACPECSGTLVLDPVSAPKWRLDCNMCNCLVFLPQGAHRISTTEER
CPDCDSKLLEVDFNKKTTPLEDGATLYVGCIICDELLHSLVEMKHGKSFSRRTGSRGRGR
GTGRGRGRGSGKRIDPKMSFRDF
NT seq 2592 nt   +upstreamnt  +downstreamnt
atggctccttccaaagttctcatggtggcggagaagcctagcattgctctctcaattgct
tccgcactctcccaaggccagatgtcaacgagaaagggcagtactgatgttcatgagttt
gatggaacgtttcgcggatttcatgcgcattttaaagtcacctcagttattggtcatgtt
ttcagtgtagattttccagcaacacatcaagattggaaagtcaccgatccattggatctt
ttccatgctccaattattaaggcagaatcaaaccctaaggctcatatttgtaggcatttg
aaccaagaagctcgtggctgtggtcatttggtgttatggttggattgtgatcgtgaagga
gaaaatatatgctttgaagttattgagtgcactggttttcatgcaagggatgctagcaga
agggtttatcgtgcacggttttcttctgttataggcaaagaccttatgaaggctatggac
aacctcgttgaacccaacagagatgaggcactggcagtggatgctcggcaagagatagat
ttgaaagttggagttgcctttacacgatttcaaaccacttatttccagggaaaatatggg
aatcttgattctagagtcatctcctacggaccatgtcaaactcccaccctagggttttgt
gtacagcgctatttgcaaataactacttttaagccagaaaagttttgggctttgcgacct
tacataatgcaagatggatatgaacttcagctagaatgggagcgtaacaagttgttcgac
gtagatgtcactattatgtttcaaaagttggtaatggaagatggaattttagaagttact
gaaatatcagaaaaacaggaaagcaaaagtcgtccttctggtcttaatacggtgaatctt
ctgaaggttgcatctagtggacttggctttgggcctcaaatggcaatgcaactggctgaa
cgtttgtatactcaaggattcatcagctatccacgtacagagagcacggcctatccttct
tcatttgactttagaggcacccttgctttactggcaaagaacccagcatgggccaatgat
gtgcagagactactcaacgatggatatcgtaaaccacaatctggaacagatgcaggtgac
catcctcctattaccccgatgatgtcagcaactgaggatatgctaggcaaagatgcttgg
agattataccagtatgtatgtcaacactttatggggactgtctctccagactgcaagtat
gtaaggacaaatgtcaagttttcaattggtggagaattcttccattgcacagggcagcat
gttacggttgaaggatttacatctgtcatgccatggttggcagtaaaggagaaaaacctt
cctcggtttataaaaggagagaagatagaagcatcaaaagtggagctatatgaggggagt
actgcacctccggattatctcactgagagtgaactgatttccctgatggagaagtatgga
ataggcacggatgcatcaatacctgtgcatattaacaacatatgcgagcgtaactatgtg
caggtacaagctggcagaaagttggttccaactagcctaggtatcaccttgataagaggc
tatcaatgtattgatccagatctctgtttgccagatattcgcagtttcattgagcaacag
attactcttgttgctaaaggtcaaatggatcatattcatgttgtgctacatgtactacaa
caattcaagcaaaagtacacttattttgttaagcagattgaaaacatggatgcgttgttt
gaagcacagttttccccactcgctgactcaggacgtgctctcagcaagtgtgggaaatgc
cttcgatacatgaaatatatctctatgcaaccatcacgtctgtactgtggtacatgtgag
gaggtttattatcttcctcaaaatggaactataaagctttacaaggaactttcttgccca
ttagacaactttgagcttctgattttctcgatgcctggtccagaagggaagtcgttccca
ctctgcccatactgctacaatagccctccctttgaaggtgttgacacactcttcggtgcc
gctaaaaccggtagtactggcaagttggggaagggagctggaatgccatgcttcctctgc
cctcaccccacatgccgacattcactgatttcccaaggagtctgtgcttgtccggaatgt
agtgggacactcgtcctagaccctgtaagtgctcccaagtggaggcttgattgcaatatg
tgcaattgccttgtcttcctccctcaaggtgctcacaggatttccactaccgaggagcga
tgtcccgactgtgactctaaactcttagaagttgacttcaataagaaaacgacacctttg
gaggatggagcaaccctttatgttggttgcattatctgcgatgagttgcttcattcgctt
gtggaaatgaagcatgggaaatcattttccagacgcacaggttcgagaggaagggggaga
ggaactgggagaggaaggggaagaggaagtgggaagaggatagaccccaaaatgagtttc
cgagatttctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (34)   

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